{"id":105,"date":"2020-10-28T12:44:10","date_gmt":"2020-10-28T12:44:10","guid":{"rendered":"https:\/\/www.embl.org\/about\/info\/mmpu\/?page_id=105"},"modified":"2026-03-26T13:01:13","modified_gmt":"2026-03-26T13:01:13","slug":"systems-medicine-of-cancer-drugs","status":"publish","type":"page","link":"https:\/\/www.embl.org\/about\/info\/mmpu\/research-groups\/systems-medicine-of-cancer-drugs\/","title":{"rendered":"Systems Medicine of Cancer Therapies"},"content":{"rendered":"\n<div class=\"vf-grid | vf-grid__col-3\"><div class=\"vf-grid__col--span-2\"><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<h2 class=\"wp-block-heading\">Group leaders: Wolfgang Huber, Sascha Dietrich and Junyan Lu<\/h2>\n\n\n\n<h3 class=\"wp-block-heading\"><strong>What motivates us<\/strong><\/h3>\n\n\n\n<p>Why do some cancer treatments elicit response in some patients but not others? How do cancers become resistant to treatment? These are major clinical and scientific challenges. We aim to understand the molecular biological mechanisms that underlie them. We hope to contribute to new treatment strategies, improvements to existing therapies with adjuvants or combinatorics, and better patient stratifications.<\/p>\n\n\n\n<h3 class=\"wp-block-heading\"><strong>Our approach<\/strong><\/h3>\n\n\n\n<p>We use a systems medicine approach that combines ex-vivo drug perturbation profiling on primary cells from lymphoma and leukaemia patients, single-cell multi-omics, and spatial omics. By machine learning \/ AI based-multi-modal integration and careful computational biology, we aim to dissect the interaction between tumour cells, the tumour microenvironment and the immune system, and modern cancer treatments such as targeted compounds and immunotherapies.<\/p>\n\n\n\n<p>Our joint expertise brings together:<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Applied bioinformatics and biomedical data science<\/li>\n\n\n\n<li>Access to samples from large, systematic clinical studies and biobanks<\/li>\n\n\n\n<li>Direct clinical experience with the cancer entities we study<\/li>\n\n\n\n<li>Cutting-edge single cell and spatial omics instrumentation<\/li>\n\n\n\n<li>Statistical method development<\/li>\n<\/ul>\n\n\n\n<h3 class=\"wp-block-heading\"><strong>Outputs (recent highlights)<\/strong><\/h3>\n\n\n\n<p>We demonstrated feasibility in a routine clinical setting of an assay for newly diagnosed blood cancers to record ex-vivo their response to a panel of drugs and return the results to the treating physician with 7-day turnaround [<a href=\"https:\/\/doi.org\/10.1038\/s43018-023-00645-5\">Liebers, Bruch et al., Nature Cancer 2023<\/a>]. We showed the utility of multi-omics factor analysis (MOFA) to discover an important new type of biological heterogeneity in CLL [<a href=\"https:\/\/doi.org\/10.1038\/s43018-021-00216-6\">Lu, Cannizzaro et al, Nature Cancer 2021<\/a>]. We studied the impact of the tumour microenvironment on treatment response and disease outcomes via cytokines [<a href=\"https:\/\/doi.org\/10.15252\/msb.202110855\">Bruch, Giles et al., Molecular Systems Biology 2022<\/a>] and and via T cells [<a href=\"https:\/\/doi.org\/10.1101\/2022.11.04.514366\">Roider et al., Nature Cell Biology 2024<\/a>]. We contributed to safety improvements of CAR T cell therapies [<a href=\"https:\/\/doi.org\/10.1056\/nejmoa2402730\">Kobbe et al., NEJM 2024<\/a>].<\/p>\n\n\n\n<h3 class=\"wp-block-heading\"><strong>Current and future work<\/strong><\/h3>\n\n\n\n<p>Our current and future work is organized along three lines:<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Enhance data-driven statistical analysis with machine deep learning \/ AI models that represent prior knowledge of molecular biological networks and of cell-, tissue- and organ-scale spatial organisation<\/li>\n\n\n\n<li>Identify proteomic and metabolic biomarkers for predicting treatment response, by combining mass-spectrometry with multi-omics<\/li>\n\n\n\n<li>Push the boundaries of spatial omics for predictive and biology-based understanding of the response to immunotherapies (immune checkpoint inhibitors, bispecific antibodies, CAR T cells)<\/li>\n<\/ul>\n\n\n\n<h3 class=\"wp-block-heading\"><strong>Work with us<\/strong><\/h3>\n\n\n\n<p>We are continually looking for energetic and ambitious researchers at different levels (master thesis, doctoral research, postdoc, research software engineer etc.) to join our team \u2014 get in touch!<\/p>\n\n\n\n<p>We particularly welcome candidates who will be able to contribute to technology development and scaling in spatial omics of cancer tissues and models, in statistical bioinformatics and data science, and\/or the use of deep learning tools for bioimage analysis and for biological knowledge representation.<\/p>\n\n\n\n<p><\/p>\n\n\n\n<details  class=\"vf-details\" id=\"\"  >\n<summary class=\"vf-details--summary\">\nImportant publications<\/summary>\n<div class=\"acf-innerblocks-container\">\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/40890552\/\">Functional phenotyping of genomic variants using joint multiomic single-cell DNA-RNA sequencing.<\/a><br>Lindenhofer D, Bauman JR, Hawkins JA, Fitzgerald D, Yildiz U, Jung H, Korosteleva A, Marttinen M, Kueblbeck M, Zaugg JB, Noh KM, Dietrich S, Huber W, Stegle O, Steinmetz LM. <br>Nat Methods. 2025 Oct;22(10):2032-2041. doi: 10.1038\/s41592-025-02805-0. Epub 2025 Sep 1. PMID: 40890552<\/p>\n\n\n\n<p><\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/40588565\/\">Disease-specific U1 spliceosomal RNA mutations in mature B-cell neoplasms.<\/a><br>Nadeu F, Shuai S, Clot G, Hilton LK, Diaz-Navarro A, Mart\u00edn S, Royo R, Baumann T, Kulis M, L\u00f3pez-Oreja I, Cossio M, Lu J, Ljungstr\u00f6m V, Young E, Plevova K, Knisbacher BA, Lin Z, Hahn CK, Bousquets P, Alcoceba M, Gonz\u00e1lez M, Colado E, Payer \u00c1R, Aymerich M, Terol MJ, Rivas-Delgado A, Enjuanes A, Ruiz-Gasp\u00e0 S, Chatzikonstantinou T, H\u00e4gerstrand D, Jylh\u00e4 C, Skaftason A, Mansouri L, Stranska K, Doubek M, van Gastel-Mol EJ, Davis Z, Walewska R, Scarf\u00f2 L, Trentin L, Visentin A, Parikh SA, Rabe KG, Moia R, Armand M, Rossi D, Davi F, Gaidano G, Kay NE, Shanafelt TD, Ghia P, Oscier D, Langerak AW, Be\u00e0 S, L\u00f3pez-Guillermo A, Neuberg D, Wu CJ, Getz G, Pospisilova S, Stamatopoulos K, Rosenquist R, Huber W, Zenz T, Colomer D, Mart\u00edn-Subero JI, Delgado J, Morin RD, Stein LD, Puente XS, Campo E. <br>Leukemia. 2025 Sep;39(9):2076-2086. doi: 10.1038\/s41375-025-02667-7. Epub 2025 Jun 30. PMID: 40588565<\/p>\n\n\n\n<p><a href=\"https:\/\/www.biorxiv.org\/content\/10.1101\/2025.04.29.651202v1\">Spatialproteomics &#8211; an interoperable toolbox for analyzing highly multiplexed fluorescence image data<\/a>. <br>Matthias Meyer-Bender, Harald V\u00f6hringer, Christina Schniederjohann, Sarah Koziel, Erin Chung, Ekaterina Popova, Alexander Brobeil, Lisa-Maria Held, Aamir Munir, Scverse Community, Sascha Dietrich, Peter-Martin Bruch, and Wolfgang Huber. <br><em>bioR\u03c7iv<\/em>, May 2025.<br><a href=\"https:\/\/doi.org\/10.1101\/2025.04.29.651202\" target=\"_blank\" rel=\"noreferrer noopener\">DOI:10.1101\/2025.04.29.651202<\/a> &#8211; <a href=\"https:\/\/doi.org\/10.1101\/2025.04.29.651202\" target=\"_blank\" rel=\"noreferrer noopener\">Preprint<\/a> &#8211; <a href=\"https:\/\/europepmc.org\/article\/PPR\/PPR1013346\" target=\"_blank\" rel=\"noreferrer noopener\">EuropePMC<\/a>.<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/39869826\/\">IAP dependency of T-cell prolymphocytic leukemia identified by high-throughput drug screening.<\/a><br>Pohly MF, Putzker K, Scheinost S, Ben Taarit L, Walther T, Kummer S, Wertheimer T, Lin M, Do THL, Handler K, Michler J, Kivioja J, Bach K, Kisele S, Kim J, Dietrich S, Bornhauser B, Wong WW, Becher B, Moor A, Lewis J, Ficht X, Lu J, Huber W, Zenz T. <br>Blood. 2025 May 15;145(20):2336-2352. doi: 10.1182\/blood.2024027171. PMID: 39869826<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/40025512\/\">BCL-2 dependence is a favorable predictive marker of response to therapy for chronic lymphocytic leukemia.<\/a><br>Chong SJF, Lu J, Valentin R, Lehmberg TZ, Eu JQ, Wang J, Zhu F, Kong LR, Fernandes SM, Zhang J, Herbaux C, Goh BC, Brown JR, Niemann CU, Huber W, Zenz T, Davids MS. <br>Mol Cancer. 2025 Mar 3;24(1):62. doi: 10.1186\/s12943-025-02260-7. PMID: 40025512<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/39884778\/\">Blocking the CD39\/CD73 pathway synergizes with anti-CD20 bispecific antibody in nodal B-cell lymphoma.<\/a><br>Kolbe C, Kauer J, Brinkmann B, Dreger P, Huber W, M\u00fcller-Tidow C, Dietrich S, Roider T. J <br>Immunother Cancer. 2025 Jan 30;13(1):e009245. doi: 10.1136\/jitc-2024-009245. PMID: 39884778<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/38509327\/\">SpatialData: an open and universal data framework for spatial omics.<\/a><br>Marconato L, Palla G, Yamauchi KA, Virshup I, Heidari E, Treis T, Vierdag WM, Toth M, Stockhaus S, Shrestha RB, Rombaut B, Pollaris L, Lehner L, V\u00f6hringer H, Kats I, Saeys Y, Saka SK, Huber W, Gerstung M, Moore J, Theis FJ, Stegle O. <br>Nat Methods. 2025 Jan;22(1):58-62. doi: 10.1038\/s41592-024-02212-x. Epub 2024 Mar 20. PMID: 38509327<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/39424733\/\">Multiplexed Immunophenotyping of Lymphoma Tissue Samples.<\/a><br>Schniederjohann C, Bruch PM, Dietrich S, Neumann F.<br>Methods Mol Biol. 2025;2865:375-393. doi: 10.1007\/978-1-0716-4188-0_16.PMID: 39424733<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/39589371\/\">Aggressive Lymphoma after CD19 CAR T-Cell Therapy.<\/a><br>Kobbe G, Br\u00fcggemann M, Baermann BN, Wiegand L, Trautmann H, Yousefian S, Libertini S, Menssen HD, Maier HJ, Ulrich P, Gao J, Bruch PM, Liebers N, Radujkovic A, Seifert M, Schniederjohann C, Paramasivam N, Fitzgerald D, Seidel M, Esposito I, Germing U, Cadeddu RP, Nachtkamp K, J\u00e4ger P, Ulrych T, Fischer JC, Rox JM, Giesel F, Koch R, Antoch G, Distler JHW, Meuth SG, Jacobsen M, H\u00fcbschmann D, Lu J, Iaccarino I, Haas S, Damm F, Dietrich S.<br>N Engl J Med. 2024 Oct 3;391(13):1217-1226. doi: 10.1056\/NEJMoa2402730.PMID: 39589371<\/p>\n\n\n\n<p><a rel=\"noreferrer noopener\" href=\"https:\/\/www.nature.com\/articles\/s41556-024-01358-2\" target=\"_blank\">Multimodal and spatially resolved profiling identifies distinct patterns of T-cell infiltration in nodal B-cell lymphoma entities<\/a>.<br>Tobias Roider, Marc&nbsp;A. Baertsch, Donnacha Fitzgerald, Harald V\u00f6hringer, Berit&nbsp;J. Brinkmann, Felix Czernilofsky, Mareike Knoll, Laura Lla\u00f3-Cid, Peter-Martin Bruch, Nora Liebers, Christian&nbsp;M. Sch\u00fcrch, Verena Passerini, Alexander Brobeil, Gunhild Mechtersheimer, Carsten M\u00fcller-Tidow, Oliver Weigert, Martina Seiffert, Garry&nbsp;P. Nolan, Wolfgang Huber, and Sascha Dietrich<br><em>Nature Cell Biology<\/em>  2024, Feb 20 volume&nbsp;26,&nbsp;pages 478\u2013489, <a rel=\"noreferrer noopener\" href=\"https:\/\/doi.org\/10.1038\/s41556-024-01358-2\" target=\"_blank\">DOI:10.1038\/s41556-024-01358-2<\/a> <\/p>\n\n\n\n<p><a rel=\"noreferrer noopener\" href=\"https:\/\/www.biorxiv.org\/content\/10.1101\/2023.11.06.565756v2\" data-type=\"URL\" data-id=\"https:\/\/www.biorxiv.org\/content\/10.1101\/2023.11.06.565756v2\" target=\"_blank\">A single-cell multi-omic and spatial atlas of B cell lymphomas reveals differentiation drives intratumor heterogeneity. <\/a><br>Donnacha Fitzgerald, Tobias Roider, Marc-Andrea Baertsch, Artur Kibler, Anastasiia Horlova, Erin Chung, Harald V\u00f6hringer, Anna Mathioudaki, Bettina Budeus, Verena Passerini, Mareike Knoll, Johannes Mammen, Linsha Li, L\u00e9andra Caill\u00e9, Felix Czernilofsky, Peter-Martin Bruch, Nora Liebers, Matthias Meyer-Bender, Oliver Weigert, Judith Zaugg, Garry Nolan, Marc Seifert, Sascha Dietrich, and Wolfgang Huber. <br><em>bioR\u03c7iv<\/em>, 2023. DOI:10.1101\/2023.11.06.565756 &#8211; <a rel=\"noreferrer noopener\" href=\"https:\/\/doi.org\/10.1101\/2023.11.06.565756\" target=\"_blank\">Preprint<\/a> &#8211; <a rel=\"noreferrer noopener\" href=\"https:\/\/europepmc.org\/article\/PPR\/PPR754138\" target=\"_blank\">EuropePMC<\/a>.<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/37783805\/\">Ex vivo drug response profiling for response and outcome prediction in hematologic malignancies: the prospective non-interventional SMARTrial.<\/a><br>Liebers N, Bruch PM, Terzer T, Hernandez-Hernandez M, Paramasivam N, Fitzgerald D, Altmann H, Roider T, Kolb C, Knoll M, Lenze A, Platzbecker U, R\u00f6llig C, Baldus C, Serve H, Bornh\u00e4user M, H\u00fcbschmann D, M\u00fcller-Tidow C, St\u00f6lzel F, Huber W, Benner A, Zenz T, Lu J, Dietrich S.<br>Nat Cancer. 2023 Oct 2. doi: 10.1038\/s43018-023-00645-5. Online ahead of print.PMID: 37783805<\/p>\n\n\n\n<p><a rel=\"noreferrer noopener\" href=\"https:\/\/ashpublications.org\/bloodadvances\/article\/doi\/10.1182\/bloodadvances.2022009652\/496494\/Comparing-the-value-of-mono-versus-coculture-for\" target=\"_blank\">Comparing the value of mono- versus coculture for high-throughput compound screening in hematological malignancies<\/a><br>Sophie A. Herbst, Vladislav Kim, Tobias Roider, Eva C. Schitter, Peter-Martin Bruch, Nora Liebers, Carolin Kolb, Mareike Knoll, Junyan Lu, Peter Dreger, Carsten M\u00fcller-Tidow, Thorsten Zenz, Wolfgang Huber, Sascha Dietrich<br>Blood advances June 23, 2023 &nbsp;https:\/\/doi.org\/10.1182\/bloodadvances.2022009652.<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/36550212\/\">Retrospective analysis of hematopoietic cell transplantation for blastic plasmacytoid dendritic cell neoplasm: conditioning intensity matters.<\/a><br>Bruch PM, Dietrich S, Finel H, Boumendil A, Greinix H, Heinicke T, Bethge W, Beelen D, Schmid C, Martin H, Castagna L, Scheid C, Sch\u00e4fer-Eckart K, Bittenbring J, Finke J, Sengeloev H, Heiblig M, Cornelissen J, Chevallier P, Mohty M, Robinson S, Montoto S, Dreger P.<br>Leukemia. 2023 Feb;37(2):465-472. doi: 10.1038\/s41375-022-01782-z. Epub 2022 Dec 22.PMID: 36550212<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/35857899\/\">Venetoclax synergizes with gilteritinib in FLT3 wild-type high-risk acute myeloid leukemia by suppressing MCL-1.<\/a><br>Janssen M, Schmidt C, Bruch PM, Blank MF, Rohde C, Waclawiczek A, Heid D, Renders S, G\u00f6llner S, Vierbaum L, Besenbeck B, Herbst SA, Knoll M, Kolb C, Przybylla A, Weidenauer K, Ludwig AK, Fabre M, Gu M, Schlenk RF, St\u00f6lzel F, Bornh\u00e4user M, R\u00f6llig C, Platzbecker U, Baldus C, Serve H, Sauer T, Raffel S, Pabst C, Vassiliou G, Vick B, Jeremias I, Trumpp A, Krijgsveld J, M\u00fcller-Tidow C, Dietrich S.<br>Blood. 2022 Dec 15;140(24):2594-2610. doi: 10.1182\/blood.2021014241.PMID: 35857899<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/36605986\/\" target=\"_blank\" rel=\"noreferrer noopener\">Pre-analytical processing of plasma and serum samples for combined proteome and metabolome analysis.<\/a><br>Gegner HM, Naake T, Dugourd A, M\u00fcller T, Czernilofsky F, Kliewer G, J\u00e4ger E, Helm B, Kunze-Rohrbach N, Klingm\u00fcller U, Hopf C, M\u00fcller-Tidow C, Dietrich S, Saez-Rodriguez J, Huber W, Hell R, Poschet G, Krijgsveld J.<br>Front Mol Biosci. 2022 Dec 20;9:961448. doi: 10.3389\/fmolb.2022.961448. eCollection 2022.PMID: 36605986<\/p>\n\n\n\n<p><a rel=\"noreferrer noopener\" href=\"https:\/\/ashpublications.org\/blood\/article\/140\/Supplement%201\/752\/489379\/Single-Cell-Multi-Omic-and-Spatial-Analysis-of\" data-type=\"URL\" data-id=\"https:\/\/ashpublications.org\/blood\/article\/140\/Supplement%201\/752\/489379\/Single-Cell-Multi-Omic-and-Spatial-Analysis-of\" target=\"_blank\">Single-cell multi-omic and spatial analysis of nodal B cell non-Hodgkin lymphomas reveals plasticity in B cell maturation as a driver of intratumor heterogeneity<\/a>.<br>Donnacha Fitzgerald, Tobias Roider, Marc-A. Baertsch, Harald V\u00f6hringer, Mareike Knoll, Bettina Budeus, Artur Kibler, Anna Mathioudaki, L\u00e9andra Caill\u00e9, Linsha Li, Johannes Mammen, Marc Seifert, Wolfgang Huber, and Sascha Dietrich.<br>Blood, 140:742, November 2022. DOI:10.1182\/blood-2022-156210<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/36424487\/\">Functional analysis of structural variants in single cells using Strand-seq.<\/a><br>Jeong H, Grimes K, Rauwolf KK, Bruch PM, Rausch T, Hasenfeld P, Benito E, Roider T, Sabarinathan R, Porubsky D, Herbst SA, Erarslan-Uysal B, Jann JC, Marschall T, Nowak D, Bourquin JP, Kulozik AE, Dietrich S, Bornhauser B, Sanders AD, Korbel JO.<br>Nat Biotechnol. 2022 Nov 24. doi: 10.1038\/s41587-022-01551-4. Online ahead of print.PMID: 36424487<\/p>\n\n\n\n<p><a href=\"https:\/\/www.biorxiv.org\/content\/10.1101\/2022.11.04.514366v3\">Multimodal and spatially resolved profiling identifies distinct patterns of T-cell infiltration in nodal B-cell lymphoma entities<\/a><br>Roider T, Marc A. Baertsch et al<br>bioRxiv Nov 8, 2022<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/36266272\/\">Proteogenomics refines the molecular classification of chronic lymphocytic leukemia.<\/a><br>Herbst SA, Vesterlund M, Helmboldt AJ, Jafari R, Siavelis I, Stahl M, Schitter EC, Liebers N, Brinkmann BJ, Czernilofsky F, Roider T, Bruch PM, Iskar M, Kittai A, Huang Y, Lu J, Richter S, Mermelekas G, Umer HM, Knoll M, Kolb C, Lenze A, Cao X, \u00d6sterholm C, Wahnschaffe L, Herling C, Scheinost S, Ganzinger M, Mansouri L, Kriegsmann K, Kriegsmann M, Anders S, Zapatka M, Del Poeta G, Zucchetto A, Bomben R, Gattei V, Dreger P, Woyach J, Herling M, M\u00fcller-Tidow C, Rosenquist R, Stilgenbauer S, Zenz T, Huber W, Tausch E, Lehti\u00f6 J, Dietrich S.<br>Nat Commun. 2022 Oct 20;13(1):6226. doi: 10.1038\/s41467-022-33385-8.PMID: 36266272<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/35994503\/\">Inferring tumor-specific cancer dependencies through integrating ex vivo drug response assays and drug-protein profiling.<\/a><br>Batzilla A, Lu J, Kivioja J, Putzker K, Lewis J, Zenz T, Huber W.<br>PLoS Comput Biol. 2022 Aug 22;18(8):e1010438. doi: 10.1371\/journal.pcbi.1010438. eCollection 2022 Aug.PMID: 35994503<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/35959629\/\">Drug-microenvironment perturbations reveal resistance mechanisms and prognostic subgroups in CLL. <\/a><br>Bruch PM, Giles HA, Kolb C, Herbst SA, Becirovic T, Roider T, Lu J, Scheinost S, Wagner L, Huellein J, Berest I, Kriegsmann M, Kriegsmann K, Zgorzelski C, Dreger P, Zaugg JB, M\u00fcller-Tidow C, Zenz T, Huber W, Dietrich S. <br>Mol Syst Biol. 2022 Aug;18(8):e10855. doi: 10.15252\/msb.202110855. PMID: 35959629<\/p>\n\n\n\n<p><a href=\"https:\/\/www.frontiersin.org\/articles\/10.3389\/fmolb.2022.841373\/full\">Networks and graphs discovery in metabolomics data analysis and interpretation<\/a><br>A Amara, C Frainay, F Jourdan, T Naake, S Neumann et al<br>Frontiers in Molecular Biosciences, 08. March 2022, 223<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/34669919\/\">Humoral and cellular responses after COVID-19 vaccination in anti-CD20-treated lymphoma patients.<\/a><br>Liebers N, Speer C, Benning L, Bruch PM, Kraemer I, Meissner J, Schnitzler P, Kr\u00e4usslich HG, Dreger P, Mueller-Tidow C, Poschke I, Dietrich S<strong>.<\/strong><br>Blood. 2022 Jan 6;139(1):142-147. doi: 10.1182\/blood.2021013445.PMID: 34669919<\/p>\n\n\n\n<p><a href=\"https:\/\/www.biorxiv.org\/content\/10.1101\/2022.01.11.475864v1\">Inferring tumor-specific cancer dependencies through integrating ex-vivo drug response assays and drug-protein profiling<\/a> <br>Alina Batzilla, Junyan Lu, Jarno Kivioja, Kerstin Putzker, Joe Lewis, Thorsten Zenz, Wolfgang Huber <br>bioRxiv 2022.01.11.475864; doi: https:\/\/doi.org\/10.1101\/2022.01.11.475864<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/34788796\/\">MatrixQCvis: shiny-based interactive data quality exploration for omics data.<\/a> <br>Naake T, Huber W. <br>Bioinformatics. 2021 Nov 12;38(4):1181-2. doi: 10.1093\/bioinformatics\/btab748. Online ahead of print. PMID: 34788796<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/34741066\/\">Pairwise effects between lipid GWAS genes modulate lipid plasma levels and cellular uptake.<\/a> <br>Zimo\u0144 M, Huang Y, Trasta A, Halavatyi A, Liu JZ, Chen CY, Blattmann P, Klaus B, Whelan CD, Sexton D, John S, Huber W, Tsai EA, Pepperkok R, Runz H. <br>Nat Commun. 2021 Nov 5;12(1):6411. doi: 10.1038\/s41467-021-26761-3. PMID: 34741066<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/34423310\/\">Multi-omics reveals clinically relevant proliferative drive associated with mTOR-MYC-OXPHOS activity in chronic lymphocytic leukemia.<\/a><br>Lu J, Cannizzaro E, Meier-Abt F, Scheinost S, Bruch PM, Giles HA, L\u00fctge A, H\u00fcllein J, Wagner L, Giacopelli B, Nadeu F, Delgado J, Campo E, Mangolini M, Ringshausen I, B\u00f6ttcher M, Mougiakakos D, Jacobs A, Bodenmiller B, Dietrich S, Oakes CC, Zenz T, Huber W.<br>Nat Cancer. 2021 Aug;2(8):853-864. doi: 10.1038\/s43018-021-00216-6. Epub 2021 Jul 1. PMID: 34423310<\/p>\n\n\n\n<p>Mapping drug-microenvironment-genetic interplay in CLL reveals trisomy 12 as a modulator of microenvironmental signals<br>Peter-Martin Bruch, Holly A. R. Giles, Carolin Kolb, Sophie A. Herbst, Tina Becirovic, Tobias Roider, Junyan Lu, Sebastian Scheinost, Lena Wagner, Jennifer Huellein, Ivan Berest, Mark Kriegsmann, Katharina Kriegsmann, Christiane Zgorzelski, Peter Dreger, Judith B. Zaugg, Carsten M\u00fcller-Tidow, Thorsten Zenz, Wolfgang Huber, Sascha Dietrich<br>biorxiv <a href=\"https:\/\/doi.org\/10.1101\/2021.07.23.453514\">https:\/\/doi.org\/10.1101\/2021.07.23.453514<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/34196677\/\">Polatuzumab vedotin as a salvage and bridging treatment in relapsed or refractory large B-cell lymphomas.<\/a><br>Liebers N, Duell J, Fitzgerald D, Kerkhoff A, Noerenberg D, Kaebisch E, Acker F, Fuhrmann S, Leng C, Welslau M, Chemnitz J, Middeke JM, Weber T, Holtick U, Trappe R, Pfannes R, Liersch R, Spoer C, Fuxius S, Gebauer N, Caill\u00e9 L, Geer T, Koenecke C, Keller U, Claus R, Mougiakakos D, Mayer S, Huettmann A, Pott C, Trummer A, Wulf G, Brunnberg U, Bullinger L, Hess G, Mueller-Tidow C, Glass B, Lenz G, Dreger P, Dietrich S<strong>.<\/strong><br>Blood Adv. 2021 Jul 13;5(13):2707-2716. doi: 10.1182\/bloodadvances.2020004155. PMID: 34196677<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/34189564\/\">The Protein Landscape of Chronic Lymphocytic Leukemia (CLL).<\/a><br>Meier-Abt F, Lu J, Cannizzaro E, Pohly MF, Kummer S, Pfammatter S, Kunz L, Collins BC, Nadeu F, Lee KS, Xue P, Gwerder M, Roiss M, H\u00fcllein J, Scheinost S, Dietrich S, Campo E, Huber W, Aebersold R, Zenz T.<br>Blood. 2021 Jun 29:blood.2020009741. doi: 10.1182\/blood.2020009741. Online ahead of print. PMID: 34189564<br><\/p>\n\n\n\n<p>Transformation and Preprocessing of Single-Cell RNA-Seq Data<br>Constantin Ahlmann-Eltze, Wolfgang Huber<br>Biorxiv June 25, 2021 <a href=\"https:\/\/doi.org\/10.1101\/2021.06.24.449781\">https:\/\/doi.org\/10.1101\/2021.06.24.449781<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/33295604\/\">glmGamPoi: fitting Gamma-Poisson generalized linear models on single cell count data.<\/a><br>Ahlmann-Eltze C, Huber W.<br>Bioinformatics. 2021 Apr 5;36(24):5701-5702. doi: 10.1093\/bioinformatics\/btaa1009. PMID: 33295604<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/32638373\/\">The impact of SAMHD1 expression and mutation status in mantle cell lymphoma: An analysis of the MCL Younger and Elderly trial.<\/a><br>Roider T, Wang X, H\u00fcttl K, M\u00fcller-Tidow C, Klapper W, Rosenwald A, Stewart JP, de Castro DG, Dreger P, Hermine O, Kluin-Nelemans HC, Grabe N, Dreyling M, Pott C, Ott G, Hoster E, Dietrich S.<br>Int J Cancer. 2021 Jan 1;148(1):150-160. doi: 10.1002\/ijc.33202. Epub 2020 Aug 15. PMID: 32638373<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/32791934\/\">Miniaturized Drug Sensitivity and Resistance Test on Patient-Derived Cells Using Droplet-Microarray.<\/a><br>Popova AA, Dietrich S, Huber W, Reischl M, Peravali R, Levkin PA.<br>SLAS Technol. 2020 Aug 13:2472630320934432. doi: 10.1177\/2472630320934432. Online ahead of print. PMID: 32791934<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/32638373\/\">The impact of SAMHD1 expression and mutation status in mantle cell lymphoma: An analysis of the MCL Younger and Elderly trial.<\/a><br>Roider T, Wang X, H\u00fcttl K, M\u00fcller-Tidow C, Klapper W, Rosenwald A, Stewart JP, Gonzalez de Castro D, Dreger P, Hermine O, Kluin-Nelemans HC, Grabe N, Dreyling M, Pott C, Ott G, Hoster E, Dietrich S.<br>Int J Cancer. 2020 Jul 7. doi: 10.1002\/ijc.33202. Online ahead of print. PMID: 32638373<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/32541878\/\">Dissecting intratumour heterogeneity of nodal B-cell lymphomas at the transcriptional, genetic and drug-response levels.<\/a><br>Roider T, Seufert J, Uvarovskii A, Frauhammer F, Bordas M, Abedpour N, Stolarczyk M, Mallm JP, Herbst SA, Bruch PM, Balke-Want H, Hundemer M, Rippe K, Goeppert B, Seiffert M, Brors B, Mechtersheimer G, Zenz T, Peifer M, Chapuy B, Schlesner M, M\u00fcller-Tidow C, Fr\u00f6hling S, Huber W, Anders S, Dietrich S.<br>Nat Cell Biol. 2020 Jul;22(7):896-906. doi: 10.1038\/s41556-020-0532-x. Epub 2020 Jun 15. PMID: 32541878<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/32404973\/\">Survey of ex vivo drug combination effects in chronic lymphocytic leukemia reveals synergistic drug effects and genetic dependencies.<\/a><br>Lukas M, Velten B, Sellner L, Tomska K, H\u00fcellein J, Walther T, Wagner L, Muley C, Wu B, Ole\u015b M, Dietrich S, Jethwa A, Bohnenberger H, Lu J, Huber W, Zenz T.<br>Leukemia. 2020 May 13. doi: 10.1038\/s41375-020-0846-5. Online ahead of print. PMID: 32404973<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/31740808\/\">BRAF inhibitor treatment in classic hairy cell leukemia: a long-term follow-up study of patients treated outside clinical trials.<\/a><br>Liebers N, Roider T, Bohn JP, Haberbosch I, Pircher A, Ferstl B, Ebn\u00f6ther M, Wendtner CM, Dearden C, Follows GA, Ho AD, M\u00fcller-Tidow C, Dreger P, Troussard X, Zenz T, Dietrich S.<br>Leukemia 2020 May;34(5):1454-1457. doi: 10.1038\/s41375-019-0646-y. Epub 2019 Nov 18. PMID: 31740808<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/31801079\/\">Quantification of Differential Transcription Factor Activity and Multiomics-Based Classification into Activators and Repressors: diffTF.<\/a> Berest I, Arnold C, Reyes-Palomares A, Palla G, Rasmussen KD, Giles H, Bruch PM, Huber W, Dietrich S, Helin K, Zaugg JB.<br>Cell Rep. 2019 Dec 3;29(10):3147-3159.e12. doi: 10.1016\/j.celrep.2019.10.106. PMID: 31801079<\/p>\n\n\n\n<p><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29925568\">Multi-Omics Factor Analysis-a framework for unsupervised integration of multi-omics data sets.<\/a><br>Argelaguet R, Velten B, Arnol D, Dietrich S, Zenz T, Marioni JC, Buettner F, Huber W, Stegle O.<br>Mol Syst Biol. 2018 Jun 20;14(6):e8124. doi: 10.15252\/msb.20178124. PMID:29925568<\/p>\n\n\n\n<p><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29227286\">Drug-perturbation-based stratification of blood cancer.<\/a><br>Dietrich S, Ole\u015b M, Lu J, Sellner L, Anders S, Velten B, Wu B, H\u00fcllein J, da Silva Liberio M, Walther T, Wagner L, Rabe S, Ghidelli-Disse S, Bantscheff M, Ole\u015b AK, S\u0142abicki M, Mock A, Oakes CC, Wang S, Oppermann S, Lukas M, Kim V, Sill M, Benner A, Jauch A, Sutton LA, Young E, Rosenquist R, Liu X, Jethwa A, Lee KS, Lewis J, Putzker K, Lutz C, Rossi D, Mokhir A, Oellerich T, Zirlik K, Herling M, Nguyen-Khac F, Plass C, Andersson E, Mustjoki S, von Kalle C, Ho AD, Hensel M, D\u00fcrig J, Ringshausen I, Zapatka M, Huber W, Zenz T.<br>J Clin Invest. 2018 Jan 2;128(1):427-445. doi: 10.1172\/JCI93801. Epub 2017 Dec 11.PMID:29227286<\/p>\n\n\n\n<p><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27240256\">Data-driven hypothesis weighting increases detection power in genome-scale multiple testing.<\/a><br>Ignatiadis N, Klaus B, Zaugg JB, Huber W.<br>Nat Methods. 2016 Jul;13(7):577-80. doi: 10.1038\/nmeth.3885.<br>PMID:27240256<\/p>\n\n\n\n<p><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26941398\">BRAF inhibition in hairy cell leukemia with low-dose vemurafenib.<\/a><br>Dietrich S, Pircher A, Endris V, Peyrade F, Wendtner CM, Follows GA, H\u00fcllein J, Jethwa A, Ellert E, Walther T, Liu X, Dyer MJ, Elter T, Brummer T, Zeiser R, Hermann M, Herold M, Weichert W, Dearden C, Haferlach T, Seiffert M, Hallek M, von Kalle C, Ho AD, Gaehler A, Andrulis M, Steurer M, Zenz T.<br>Blood. 2016 Jun 9;127(23):2847-55. doi: 10.1182\/blood-2015-11-680074.<br>PMID: 26941398<\/p>\n\n\n\n<p><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26700849\">A chemical-genetic interaction map of small molecules using high-throughput imaging in cancer cells.<\/a><br>Breinig M, Klein FA, Huber W, Boutros M.<br>Mol Syst Biol. 2015 Dec 23;11(12):846. doi: 10.15252\/msb.20156400.<br>PMID: 26700849<\/p>\n\n\n\n<p><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26237553\">Single-cell transcriptome analysis reveals coordinated ectopic gene-expression patterns in medullary thymic epithelial cells.<\/a><br>Brennecke P, Reyes A, Pinto S, Rattay K, Nguyen M, K\u00fcchler R, Huber W, Kyewski B, Steinmetz LM. Nat Immunol. 2015 Sep;16(9):933-41. doi: 10.1038\/ni.3246.<br>PMID: 26237553<\/p>\n\n\n\n<p><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26065650\">Recurrent CDKN1B (p27) mutations in hairy cell leukemia.<\/a><br>Dietrich S, H\u00fcllein J, Lee SC, Hutter B, Gonzalez D, Jayne S, Dyer MJ, Ole\u015b M, Else M, Liu X, S\u0142abicki M, Wu B, Troussard X, D\u00fcrig J, Andrulis M, Dearden C, von Kalle C, Granzow M, Jauch A, Fr\u00f6hling S, Huber W, Meggendorfer M, Haferlach T, Ho AD, Richter D, Brors B, Glimm H, Matutes E, Abdel Wahab O, Zenz T.<br>Blood. 2015 Aug 20;126(8):1005-8. doi: 10.1182\/blood-2015-04-643361.<br>PMID: 26065650<\/p>\n\n\n\n<p><a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26260686\">Improved binding site assignment by high-resolution mapping of RNA-protein interactions using iCLIP.<\/a><br>Hauer C, Curk T, Anders S, Schwarzl T, Alleaume AM, Sieber J, Hollerer I, Bhuvanagiri M, Huber W, Hentze MW, Kulozik AE.<br>Nat Commun. 2015 Aug 11;6:7921. doi: 10.1038\/ncomms8921.<br>PMID: 26260686<\/p>\n\n\n\n<p><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25748138\">A map of directional genetic interactions in a metazoan cell.<\/a><br>Fischer B, Sandmann T, Horn T, Billmann M, Chaudhary V, Huber W, Boutros M.<br>Elife. 2015 Mar 6;4. doi: 10.7554\/eLife.05464.<br>PMID:25748138<\/p>\n\n\n\n<p><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25633503\">Orchestrating high-throughput genomic analysis with Bioconductor.<\/a><br>Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Ole\u015b AK, Pag\u00e8s H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M.<br>Nat Methods. 2015 Feb;12(2):115-21. doi: 10.1038\/nmeth.3252. Review.<br>PMID: 25633503<\/p>\n\n\n\n<p><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23690412\">Continued response off treatment after BRAF inhibition in refractory hairy cell leukemia.<\/a><br>Dietrich S, H\u00fcllein J, Hundemer M, Lehners N, Jethwa A, Capper D, Acker T, Garvalov BK, Andrulis M, Blume C, Schulte C, Mandel T, Meissner J, Fr\u00f6hling S, von Kalle C, Glimm H, Ho AD, Zenz T.<br>J Clin Oncol. 2013 Jul 1;31(19):e300-3. doi: 10.1200\/JCO.2012.45.9495. No abstract available.<br>PMID:23690412<\/p>\n\n\n\n<p><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23563794\">Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping.<\/a><br>Laufer C, Fischer B, Billmann M, Huber W, Boutros M.<br>Nat Methods. 2013 May;10(5):427-31. doi: 10.1038\/nmeth.2436.<br>PMID:23563794<\/p>\n\n\n\n<p><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22621641\">BRAF inhibition in refractory hairy-cell leukemia.<\/a><br>Dietrich S, Glimm H, Andrulis M, von Kalle C, Ho AD, Zenz T.<br>N Engl J Med. 2012 May 24;366(21):2038-40. doi: 10.1056\/NEJMc1202124.<br>PMID:22621641<\/p>\n\n<\/div>\n<\/details>\n\n\n\n<details  class=\"vf-details\" id=\"group-members\"  >\n<summary class=\"vf-details--summary\">\nGroup members<\/summary>\n<div class=\"acf-innerblocks-container\">\n\n<p><strong>Shubham Agrawal<\/strong><br>Data Engineer\/Technical Assistant<br>Lu Group, Institute for Computational Biomedicine, Medical Faculty Heidelberg, Heidelberg University<br><a href=\"mailto:shubham.agrawal@uni-heidelberg.de\">shubham.agrawal@uni-heidelberg.de<\/a>&nbsp;<\/p>\n\n\n\n<p><strong>Antonia-Eugenia Angeli-Terzidou<\/strong><br>PhD Student<br>Dietrich Group, Department of Internal Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Medical Center<br>Phone: + 49 6221 56-1949<br><a href=\"mailto:Antonia.Angeli-Terzidou@med.uni-heidelberg.de\">Antonia.Angeli-Terzidou@med.uni-heidelberg.de<\/a><\/p>\n\n\n\n<p><strong>Peter-Martin Bruch, MD<\/strong><br>Physician Scientist<br>Dietrich Group, Department of Internal Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Medical Center<br>Phone: + 49 6221 56-39066<br><a href=\"mailto:Peter-Martin.Bruch@med.uni-heidelberg.de\">Peter-Martin.Bruch@med.uni-heidelberg.de<\/a><\/p>\n\n\n\n<p><strong>Erin Kim Chung<\/strong><br>PhD student (EMBL International PhD Programme \u2013 EIPP)<br>Huber Group, EMBL<br>Phone: +49 6221 387-8131<br><a href=\"mailto:erin.chung@embl.de\" target=\"_blank\" rel=\"noreferrer noopener\">erin.chung@embl.de<\/a><\/p>\n\n\n\n<p><strong>Felix Czernilofsky, MD<\/strong><br>Physician Scientist<br>Dietrich Group, Department of Internal Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Medical Center<br>Phone: + 49 6221 56-1949<br><a href=\"mailto:Felix.Czernilofsky@med.uni-heidelberg.de\">Felix.Czernilofsky@med.uni-heidelberg.de<\/a><\/p>\n\n\n\n<p><strong>Jiaojiao He<\/strong><br>PhD Student<br>Lu Group, Institute for Computational Biomedicine, Medical Faculty Heidelberg, Heidelberg University<br><a href=\"mailto:jiaojiao.he@stud.uni-heidelberg.de\">jiaojiao.he@stud.uni-heidelberg.de<\/a>&nbsp;<\/p>\n\n\n\n<p><strong>Anastasiia Horlova<\/strong><br>PhD student (EMBL International PhD Programme \u2013 EIPP)<br>Huber Group, EMBL<br>Phone: +49 6221 387 8151<br><a href=\"https:\/\/www.embl.org\/about\/info\/mmpu\/members\/systems-medicine-of-cancer-drugs\/anastasiia.horlova@embl.de\" target=\"_blank\" rel=\"noreferrer noopener\">anastasiia.horlova@embl.de<\/a><\/p>\n\n\n\n<p><strong>Sviatoslav Kharuk<\/strong><br>PhD student (EMBL International PhD Programme \u2013 EIPP)<br>Huber Group, EMBL<br>Phone: +49 6221 387-8131<br><a href=\"mailto:erin.chung@embl.de\" target=\"_blank\" rel=\"noreferrer noopener\"><\/a><a href=\"mailto:sviatoslav.kharuk@embl.de\">sviatoslav.kharuk@embl.de<\/a> <\/p>\n\n\n\n<p><strong>Sarah Patricia Koziel<\/strong><br>PhD Student<br>Dietrich Group<\/p>\n\n\n\n<p><strong>Qian-Wu Liao<\/strong><br>PhD Student<br>Lu Group, Institute for Computational Biomedicine, Medical Faculty Heidelberg, Heidelberg University<br><a href=\"mailto:QianWu.Liao@stud.uni-heidelberg.de\">QianWu.Liao@stud.uni-heidelberg.de<\/a><\/p>\n\n\n\n<p><strong>Nora Liebers, MD<\/strong><br>Physician Scientist<br>Dietrich Group, Department of Internal Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Medical Center<br>Phone: + 49 6221 56-39066<br><a href=\"mailto:Nora.Liebers@med.uni-heidelberg.de\">Nora.Liebers@med.uni-heidelberg.de<\/a><\/p>\n\n\n\n<p><strong>Caroline Lohoff<\/strong><br>PhD student<br>Lu Group, Institute for Computational Biomedicine, Medical Faculty Heidelberg, Heidelberg University<br><a href=\"mailto:caroline.lohoff@uni-heidelberg.de\">caroline.lohoff@uni-heidelberg.de<\/a><\/p>\n\n\n\n<p><strong>Matthias Meyer-Bender<\/strong><br>PhD student (EMBL International PhD Programme \u2013 EIPP)<br>Huber Group, EMBL<br>Phone: +49 6221 387-8151<br><a href=\"mailto:matthias.meyerbender@embl.de\">matthias.meyerbender@embl.de<\/a><\/p>\n\n\n\n<p><strong>Giada Sandrini, PhD<\/strong><br>Postdoc<br>Lu Group, Institute for Computational Biomedicine, Medical Faculty Heidelberg, Heidelberg University<br><\/p>\n\n\n\n<p><strong>Christina Schniederjohann<\/strong><br>PhD Student<br>Dietrich Group, Department of Internal Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Medical Center<br>Phone: + 49 6221&nbsp;56-6539<br><a href=\"mailto:Christina.Schniederjohann@med.uni-heidelberg.de\">Christina.Schniederjohann@med.uni-heidelberg.de<\/a><\/p>\n\n\n\n<p><strong>Marc Seifert, PhD<\/strong><br>Staff Scientist<br>Dietrich Group, Department of Internal Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Medical Center<\/p>\n\n\n\n<p><strong>Vladimir Vutov, PhD<\/strong><br>Postdoc<br>Lu Group, Institute for Computational Biomedicine, Medical Faculty Heidelberg, Heidelberg University<br><a href=\"mailto:vladimir.vutov@uni-heidelberg.de\">vladimir.vutov@uni-heidelberg.de<\/a><\/p>\n\n<\/div>\n<\/details>\n\n\n\n<details  class=\"vf-details\" id=\"former-members\"  >\n<summary class=\"vf-details--summary\">\nFormer members<\/summary>\n<div class=\"acf-innerblocks-container\">\n\n<p><strong>Constantin Ahlmann-Eltze<\/strong><br>PhD student (EMBL International PhD Programme \u2013 EIPP)<\/p>\n\n\n\n<p><strong>Hosna Baniadam<\/strong>, PhD student (EMBL International PhD Programme \u2013 EIPP)<\/p>\n\n\n\n<p><strong>Berit Brinkmann, PhD<\/strong> Postdoc<\/p>\n\n\n\n<p><strong>Klemens T\u00fcmay Capraz<\/strong>, PhD student (EMBL International PhD Programme \u2013 EIPP)<\/p>\n\n\n\n<p><strong>Holly Giles, PhD<\/strong><br>Postdoc<\/p>\n\n\n\n<p><strong>Donnacha Fitzgerald<\/strong>, PhD student (EMBL International PhD Programme \u2013 EIPP)<\/p>\n\n\n\n<p><strong>Laleh Haghverdi, PhD<\/strong><br>Postdoc<\/p>\n\n\n\n<p><strong>Alexander Helmboldt, PhD<\/strong><br>Postdoc<\/p>\n\n\n\n<p><strong>Sophie<\/strong> <strong>Herbst, PhD<\/strong><br>Postdoc<\/p>\n\n\n\n<p><strong>Jennifer H\u00fcllein<\/strong><br>Data Manager<\/p>\n\n\n\n<p><strong>Vladislav Kim<\/strong><br>PhD student (EMBL International PhD Programme \u2013 EIPP)<\/p>\n\n\n\n<p><strong>Carolin Kolb<\/strong><br>Technician<\/p>\n\n\n\n<p><strong>Junyan Lu, PhD<\/strong><br>Expert in Machine Learning<\/p>\n\n\n\n<p><strong>Thomas Naake, PhD<\/strong>, Postdoc<br><br><strong>Stefan Peidli, PhD<\/strong>, Postdoc<\/p>\n\n\n\n<p><strong>Tobias Roider, MD<\/strong><\/p>\n\n\n\n<p><strong>Petr Smirnov, PhD<\/strong>, Postdoc<br><br><strong>Marta Stolarczyk, PhD<\/strong><br>Postdoc<\/p>\n\n\n\n<p><strong>Britta Velten<\/strong><br>PhD student (EMBL International PhD Programme \u2013 EIPP)<\/p>\n\n\n\n<p><strong>Harald V\u00f6hringer, PhD<\/strong> Postdoc<\/p>\n\n<\/div>\n<\/details>\n\n\n\n<div style=\"height:50px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p><\/p>\n\n<\/div>\n<\/div>\n\n\n<div><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<article class=\"vf-card vf-card--brand vf-card--bordered vf-u-margin__bottom--800\" default>\n  \n  <div class=\"vf-card__content | vf-stack vf-stack--400\">\n          <h3 class=\"vf-card__heading\">\n        \n        On this page\n              <\/h3>\n    \n    \n          <p class=\"vf-card__text\"><ul>\r\n \t<li>What motivates us<\/li>\r\n \t<li>Our approach<\/li>\r\n \t<li>Outputs (recent highlights)<\/li>\r\n \t<li>Current and future work<\/li>\r\n \t<li>Work with us<\/li>\r\n \t<li>Important publications<\/li>\r\n \t<li>Group members<\/li>\r\n \t<li>Former members<\/li>\r\n<\/ul><\/p>\n      <\/div>\n<\/article>\n\n\n\n<figure class=\"vf-figure wp-block-image  | vf-figure--align vf-figure--align-inline-start   size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"200\" height=\"400\" class=\"vf-figure__image\" src=\"https:\/\/www.embl.org\/about\/info\/mmpu\/wp-content\/uploads\/2020\/10\/dietrich_huber.jpg\" alt=\"\" class=\"wp-image-271\" srcset=\"https:\/\/www.embl.org\/about\/info\/mmpu\/wp-content\/uploads\/2020\/10\/dietrich_huber.jpg 200w, https:\/\/www.embl.org\/about\/info\/mmpu\/wp-content\/uploads\/2020\/10\/dietrich_huber-150x300.jpg 150w\" sizes=\"auto, (max-width: 200px) 100vw, 200px\" \/><figcaption class=\"vf-figure__caption\">Sascha Dietrich and Wolfgang Huber<\/figcaption><\/figure>\n\n<\/div>\n<\/div>\n<\/div>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":1,"featured_media":0,"parent":56,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"template-title-left-aligned.php","meta":{"_acf_changed":false,"footnotes":""},"embl_taxonomy":[],"class_list":["post-105","page","type-page","status-publish","hentry"],"acf":[],"embl_taxonomy_terms":[],"_links":{"self":[{"href":"https:\/\/www.embl.org\/about\/info\/mmpu\/wp-json\/wp\/v2\/pages\/105","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.embl.org\/about\/info\/mmpu\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.embl.org\/about\/info\/mmpu\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.embl.org\/about\/info\/mmpu\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.embl.org\/about\/info\/mmpu\/wp-json\/wp\/v2\/comments?post=105"}],"version-history":[{"count":63,"href":"https:\/\/www.embl.org\/about\/info\/mmpu\/wp-json\/wp\/v2\/pages\/105\/revisions"}],"predecessor-version":[{"id":17209,"href":"https:\/\/www.embl.org\/about\/info\/mmpu\/wp-json\/wp\/v2\/pages\/105\/revisions\/17209"}],"up":[{"embeddable":true,"href":"https:\/\/www.embl.org\/about\/info\/mmpu\/wp-json\/wp\/v2\/pages\/56"}],"wp:attachment":[{"href":"https:\/\/www.embl.org\/about\/info\/mmpu\/wp-json\/wp\/v2\/media?parent=105"}],"wp:term":[{"taxonomy":"embl_taxonomy","embeddable":true,"href":"https:\/\/www.embl.org\/about\/info\/mmpu\/wp-json\/wp\/v2\/embl_taxonomy?post=105"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}