{"id":100,"date":"2020-10-28T12:43:55","date_gmt":"2020-10-28T12:43:55","guid":{"rendered":"https:\/\/www.embl.org\/about\/info\/mmpu\/?page_id=100"},"modified":"2026-03-24T15:24:39","modified_gmt":"2026-03-24T15:24:39","slug":"stem-cell-niche-networks","status":"publish","type":"page","link":"https:\/\/www.embl.org\/about\/info\/mmpu\/research-groups\/stem-cell-niche-networks\/","title":{"rendered":"Stem Cell\u2013Niche Networks"},"content":{"rendered":"\n<div class=\"vf-grid | vf-grid__col-3\"><div class=\"vf-grid__col--span-2\"><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<h2 class=\"wp-block-heading\">Group leaders: Judith Zaugg, Caroline Pabst and Carsten M\u00fcller-Tidow<\/h2>\n\n\n\n<h3 class=\"wp-block-heading\">Our research interest<\/h3>\n\n\n\n<p>Our research is focused on understanding the molecular and functional interactions between&nbsp;haematopoietic stem cells (HSCs) and the bone marrow niche. We primarily use the most plastic niche cell population, mesenchymal stroma cells (MSCs), to model HSC\u2013stroma cell interactions <em>in vitro<\/em>. We are specifically interested in understanding the role of MSCs in acute myeloid leukaemia (AML), and how changes in HSC\u2013niche interactions during ageing might contribute to leukaemic transformation.<\/p>\n\n\n\n<h3 class=\"wp-block-heading\">Background<\/h3>\n\n\n\n<p>Bone marrow harbours different types of stem cells comprising HSCs, which give rise to all blood cells, and MSCs, which can differentiate into different stroma cell types. MSCs play a pivotal role in maintaining normal HSC functions such as survival, quiescence, proliferation and differentiation.<\/p>\n\n\n\n<p>Our previous work has focused on understanding the pathogenesis of AML. AML is characterised by a rather small number of disease-inducing mutations and multiple epigenetic changes. Results from our groups and others point towards the niche as an essential player in AML pathogenesis. Interactions between leukaemic stem cells and the niche are likely to impact on disease initiation, maintenance and therapy response.<\/p>\n\n\n\n<p>We are combining computational biology, multi-omics methods, co-culture systems of primary human cells, and xenotransplantations to study the mutual impact of the different cell types on each other during ageing and leukaemia development.<\/p>\n\n\n\n<h3 class=\"wp-block-heading\">Goals<\/h3>\n\n\n\n<p>Our research focuses on four major aspects of HSC\u2013niche interactions:<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>The role of ageing-related changes in stem cell\u2013niche interactions in the development of haematological malignancies.<\/li>\n\n\n\n<li>Stem cell\u2013niche communication in genetically defined AML subgroups.<\/li>\n\n\n\n<li>Role of RNA-modifications in stem cell biology and stem cell\u2013niche interactions.<\/li>\n\n\n\n<li>The differential impact of distinct sources of donor HSCs on the recipient bone marrow niche.<\/li>\n<\/ul>\n\n\n\n<details  class=\"vf-details\" id=\"\"  >\n<summary class=\"vf-details--summary\">\nImportant publications<\/summary>\n<div class=\"acf-innerblocks-container\">\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/41226506\/\">Accumulation of Lymphoid Progenitors with Defective B Cell Differentiation and of Putative Natural Killer Progenitors in Aging Human Bone Marrow.<\/a><br>Poisa-Beiro L, Landry JJM, Cherdintsev A, Kardorff M, Eckstein V, Villacorta L, Zaugg J, Gavin AC, Benes V, Raffel S, Ho AD.<br>Int J Mol Sci. 2025 Oct 28;26(21):10467. doi: 10.3390\/ijms262110467.PMID: 41226506<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/40579412\/\">Role of stem-like cells in chemotherapy resistance and relapse in pediatric T-cell acute lymphoblastic leukemia.<\/a> <br>Costea J, Rauwolf KK, Zafferani P, Rausch T, Mathioudaki A, Zaugg J, Schrappe M, Eckert C, Escherich G, Bourquin JP, Bornhauser B, Kulozik AE, Korbel JO.<br>Nat Commun. 2025 Jun 27;16(1):5413. doi: 10.1038\/s41467-025-61222-1.PMID: 40579412<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/40419657\/\">Single-cell ultra-high-throughput multiplexed chromatin and RNA profiling reveals gene regulatory dynamics.<\/a> <br>Lobato-Moreno S, Yildiz U, Claringbould A, Servaas NH, Vlachou EP, Arnold C, Bauersachs HG, Campos-Forn\u00e9s V, Kim M, Berest I, Prummel KD, Noh KM, Marttinen M, Zaugg JB.<br>Nat Methods. 2025 Jun;22(6):1213-1225. doi: 10.1038\/s41592-025-02700-8. Epub 2025 May 26.PMID: 40419657<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/40265168\/\">Phosphatidic acid phosphatase LPIN1 in phospholipid metabolism and stemness in hematopoiesis and AML.<\/a><br>Huber K, Garg S, Schlautmann L, Wang R, He L, Huth R, Pouya A, Rohde C, Janssen M, L\u00fcchtenborg C, Arnold C, Luque-Navarro PM, Zaugg JB, Raffel S, M\u00fcller-Tidow C, Jeremias I, L\u00f3pez-Cara LC, Br\u00fcgger B, Pabst C.<br>Hemasphere. 2025 Apr 22;9(4):e70118. doi: 10.1002\/hem3.70118. eCollection 2025 Apr. PMID: 40265168<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/39859500\/\">A Senescent Cluster in Aged Human Hematopoietic Stem Cell Compartment as Target for Senotherapy.<\/a><br>Poisa-Beiro L, Landry JJM, Yan B, Kardorff M, Eckstein V, Villacorta L, Krammer PH, Zaugg J, Gavin AC, Benes V, Zhou D, Raffel S, Ho AD.<br>Int J Mol Sci. 2025 Jan 17;26(2):787. doi: 10.3390\/ijms26020787.PMID: 39859500<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/38118064\/\">Reversible Host-Guest Crosslinks in Supramolecular Hydrogels for On-Demand Mechanical Stimulation of Human Mesenchymal Stem Cells.<\/a><br>Linke P, Munding N, Kimmle E, Kaufmann S, Hayashi K, Nakahata M, Takashima Y, Sano M, Bastmeyer M, Holstein T, Dietrich S, M\u00fcller-Tidow C, Harada A, Ho AD, Tanaka M.<br>Adv Healthc Mater. 2024 Apr;13(10):e2302607. doi: 10.1002\/adhm.202302607. Epub 2023 Dec 25.PMID: 38118064<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/38197505\/\">The remission status of AML patients post alloSCT is associated with a distinct single-cell bone marrow T cell signature.<\/a><br>Mathioudaki A, Wang X, Sedloev DN, Huth R, Kamal A, Hundemer M, Liu Y, Vasileiou S, Lulla PD, M\u00fcller-Tidow C, Dreger P, Luft T, Sauer T, Schmitt M, Zaugg JB, Pabst C.<br>Blood. 2024 Jan 9:blood.2023021815. doi: 10.1182\/blood.2023021815. Online ahead of print.PMID: 38197505<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/37565773\/\">The relevance of the hematopoietic niche for therapy resistance in acute myeloid leukemia.<\/a><br>Allert C, M\u00fcller-Tidow C, Blank MF.<br>Int J Cancer. 2024 Jan 15;154(2):197-209. doi: 10.1002\/ijc.34684. Epub 2023 Aug 11.PMID: 37565773<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/37845284\/\">The landscape of small nucleolar RNA expression in multiple myeloma is determined by cytogenetic alterations.<\/a><br>Zhao D, Rohde C, G\u00f6llner S, Zhou F, Pauli C, Blank MF, Zinz R, Grab AL, Poos AM, John L, Huhn S, Raab MS, M\u00fcller-Tidow C, Weinhold N.<br>Leukemia. 2023 Dec;37(12):2526-2531. doi: 10.1038\/s41375-023-02060-2. Epub 2023 Oct 16.PMID: 37845284<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/37990162\/\">Stem cell collection after lenalidomide, bortezomib and dexamethasone plus elotuzumab or isatuximab in newly diagnosed multiple myeloma patients: a single centre experience from the GMMG-HD6 and -HD7 trials.<\/a><br>Kauer J, Freundt EP, Schmitt A, Weinhold N, Mai EK, M\u00fcller-Tidow C, Goldschmidt H, Raab MS, Kriegsmann K, Sauer S.<br>BMC Cancer. 2023 Nov 21;23(1):1132. doi: 10.1186\/s12885-023-11507-9.PMID: 37990162<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/37414921\/\">The ribosomal protein S6 kinase alpha-1 (RPS6KA1) induces resistance to venetoclax\/azacitidine in acute myeloid leukemia.<\/a><br>Weidenauer K, Schmidt C, Rohde C, Pauli C, Blank MF, Heid D, Waclawiczek A, Corbacioglu A, G\u00f6llner S, Lotze M, Vierbaum L, Renders S, Krijgsveld J, Raffel S, Sauer T, Trumpp A, Pabst C, M\u00fcller-Tidow C, Janssen M.<br>Leukemia. 2023 Aug;37(8):1611-1625. doi: 10.1038\/s41375-023-01951-8. Epub 2023 Jul 6.PMID: 37414921<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/37116713\/\">Physical biomarkers for human hematopoietic stem and progenitor cells.<\/a><br>Tanaka M, Thoma J, Poisa-Beiro L, Wuchter P, Eckstein V, Dietrich S, Pabst C, M\u00fcller-Tidow C, Ohta T, Ho AD.<br>Cells Dev. 2023 Jun;174:203845. doi: 10.1016\/j.cdev.2023.203845. Epub 2023 Apr 26.PMID: 37116713<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/37936633\/\">Autologous Stem Cell Collection after Daratumumab, Bortezomib, Thalidomide, and Dexamethasone versus Bortezomib, Cyclophosphamide, and Dexamethasone in Newly Diagnosed Multiple Myeloma.<\/a><br>Sauer S, Kriegsmann K, Nientiedt C, Schmitt A, M\u00fcller-Tidow C, Raab MS, Kauer J.<br>Transfus Med Hemother. 2023 Mar 24;50(5):371-381. doi: 10.1159\/000529691. eCollection 2023 Oct.PMID: 37936633<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/36259929\/\">A Dynamic rRNA Ribomethylome Drives Stemness in Acute Myeloid Leukemia.<\/a><br>Zhou F, Aroua N, Liu Y, Rohde C, Cheng J, Wirth AK, Fijalkowska D, G\u00f6llner S, Lotze M, Yun H, Yu X, Pabst C, Sauer T, Oellerich T, Serve H, R\u00f6llig C, Bornh\u00e4user M, Thiede C, Baldus C, Frye M, Raffel S, Krijgsveld J, Jeremias I, Beckmann R, Trumpp A, M\u00fcller-Tidow C.<br>Cancer Discov. 2023 Feb 6;13(2):332-347. doi: 10.1158\/2159-8290.CD-22-0210.PMID: 36259929<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/36266272\/\">Proteogenomics refines the molecular classification of chronic lymphocytic leukemia.<\/a><br>Herbst SA, Vesterlund M, Helmboldt AJ, Jafari R, Siavelis I, Stahl M, Schitter EC, Liebers N, Brinkmann BJ, Czernilofsky F, Roider T, Bruch PM, Iskar M, Kittai A, Huang Y, Lu J, Richter S, Mermelekas G, Umer HM, Knoll M, Kolb C, Lenze A, Cao X, \u00d6sterholm C, Wahnschaffe L, Herling C, Scheinost S, Ganzinger M, Mansouri L, Kriegsmann K, Kriegsmann M, Anders S, Zapatka M, Del Poeta G, Zucchetto A, Bomben R, Gattei V, Dreger P, Woyach J, Herling M, M\u00fcller-Tidow C, Rosenquist R, Stilgenbauer S, Zenz T, Huber W, Tausch E, Lehti\u00f6 J, Dietrich S.<br>Nat Commun. 2022 Oct 20;13(1):6226. doi: 10.1038\/s41467-022-33385-8.PMID: 36266272<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/36056084\/\">Protein tyrosine kinase 2b inhibition reverts niche-associated resistance to tyrosine kinase inhibitors in AML.<\/a> <br>Allert C, Waclawiczek A, Zimmermann SMN, G\u00f6llner S, Heid D, Janssen M, Renders S, Rohde C, Bauer M, Bruckmann M, Zinz R, Pauli C, Besenbeck B, Wickenhauser C, Trumpp A, Krijgsveld J, M\u00fcller-Tidow C, Blank MF. <br>Leukemia. 2022 Sep 2. doi: 10.1038\/s41375-022-01687-x. Online ahead of print. PMID: 36056084<\/p>\n\n\n\n<p>Behind-the-paper post:&nbsp;<a href=\"https:\/\/go.nature.com\/3AKd0RF\">https:\/\/go.nature.com\/3AKd0RF<\/a><\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/35857899\/\">Venetoclax synergizes with Gilteritinib in FLT3 wildtype high-risk Acute Myeloid Leukemia by suppressing MCL-1.<\/a> <br>Janssen M, Schmidt C, Bruch PM, Blank MF, Rohde C, Waclawiczek A, Heid D, Renders S, G\u00f6llner S, Vierbaum L, Besenbeck B, Herbst SA, Knoll M, Kolb C, Przybylla A, Weidenauer K, Ludwig AK, Fabre MA, Gu M, Schlenk RF, St\u00f6lzel F, Bornh\u00e4user M, R\u00f6llig C, Platzbecker U, Baldus CD, Serve H, Sauer T, Raffel S, Pabst C, Vassiliou GS, Vick B, Jeremias I, Trumpp A, Krijgsveld J, M\u00fcller-Tidow C, Dietrich S. <br>Blood. 2022 Jul 13:blood.2021014241. doi: 10.1182\/blood.2021014241. Online ahead of print. PMID: 35857899<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/35328449\/\">Glucose Metabolism and Aging of Hematopoietic Stem and Progenitor Cells.<\/a><br>Poisa-Beiro L, Landry JJM, Raffel S, Tanaka M, Zaugg J, Gavin AC, Ho AD.<br>Int J Mol Sci. 2022 Mar 11;23(6):3028. doi: 10.3390\/ijms23063028.PMID: 35328449<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/35253392\/\">CDK7\/12\/13 inhibition targets an oscillating leukemia stem cell network and synergizes with venetoclax in acute myeloid leukemia.<\/a> <br>He L, Arnold C, Thoma J, Rohde C, Kholmatov M, Garg S, Hsiao CC, Viol L, Zhang K, Sun R, Schmidt C, Janssen M, MacRae T, Huber K, Thiede C, H\u00e9bert J, Sauvageau G, Spratte J, Fluhr H, Aust G, M\u00fcller-Tidow C, Niehrs C, Pereira G, Hamann J, Tanaka M, Zaugg JB, Pabst C. <br>EMBO Mol Med. 2022 Mar 7:e14990. doi: 10.15252\/emmm.202114990. Online ahead of print. PMID: 35253392<\/p>\n\n\n\n<p><a href=\"https:\/\/www.nature.com\/articles\/s43018-021-00213-9\">Hotspot<em> DNMT3A<\/em> mutations in Clonal Hematopoiesis and Acute Myeloid Leukemia sensitize cells to Azacytidine via viral mimicry response.<\/a><br>Scheller M, Ludwig A K, G\u00f6llnerS, RohdeC, Kr\u00e4merS, St\u00e4bleS, Janssen M, M\u00fcller J-A, HeL, B\u00e4umerN, ArnoldC, Ger\u00df J, Sch\u00f6nung M, ThiedeC, NiederwieserC, NiederwieserD, ServeH, BerdelW E, ThiemU, HemmerlingI, LeuschnerF, PlassC, Schlesner M, ZauggJ, MilsomM, TrumppA, PabstC, LipkaD B, M\u00fcller-TidowC.&nbsp;<br>Nature Cancer 2021, volume&nbsp;2,&nbsp;pages&nbsp;527\u2013544 (2021).<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/33649320\/\">Identification of leukemic and pre-leukemic stem cells by clonal tracking from single-cell transcriptomics.<br><\/a>Velten L, Story BA, Hern\u00e1ndez-Malmierca P, Raffel S, Leonce DR, Milbank J, Paulsen M, Demir A, Szu-Tu C, Fr\u00f6mel R, Lutz C, Nowak D, Jann JC, Pabst C, Boch T, Hofmann WK, M\u00fcller-Tidow C, Trumpp A, Haas S, Steinmetz LM.<br>Nat Commun. 2021 Mar 1;12(1):1366. doi: 10.1038\/s41467-021-21650-1. PMID: 33649320<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/32561840\/\">A proof of concept phase I\/II pilot trial of LSD1 inhibition by tranylcypromine combined with ATRA in refractory\/relapsed AML patients not eligible for intensive therapy.<\/a><br>Wass M, G\u00f6llner S, Besenbeck B, Schlenk RF, Mundmann P, G\u00f6thert JR, Noppeney R, Schliemann C, Mikesch JH, Lenz G, Dugas M, Wermke M, R\u00f6llig C, Bornh\u00e4user M, Serve H, Platzbecker U, Foerster KI, Burhenne J, Haefeli WE, M\u00fcller LP, Binder M, Pabst C, M\u00fcller-Tidow C; Study Alliance Leukemia (SAL).<br>Leukemia. 2020 Jun 19:1-11. doi: 10.1038\/s41375-020-0892-z. Online ahead of print. PMID: 32561840<\/p>\n\n\n\n<p><a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/32097467\/\">Site-specific methylation of 18S ribosomal RNA by SNORD42A is required for acute myeloid leukemia cell proliferation.<\/a><br>Pauli C, Liu Y, Rohde C, Cui C, Fijalkowska D, Gerloff D, Walter C, Krijgsveld J, Dugas M, Edemir B, Pabst C, M\u00fcller LP, Zhou F, M\u00fcller-Tidow C.<br>Blood. 2020 Jun 4;135(23):2059-2070. doi: 10.1182\/blood.2019004121. PMID: 32097467<\/p>\n\n\n\n<p><a href=\"https:\/\/rdcu.be\/b5BRv\">Glycogen accumulation, central carbon metabolism, and aging of hematopoietic stem and progenitor cells<\/a><br>Laura poisa\u2011Beiro, Judith Thoma, Jonathan Landry, Sven Sauer, Akihisa Yamamoto, Volker Eckstein, Natalie Romanov, Simon Raffel, Georg F. Hoffmann, Peer Bork, Vladimir Benes, Anne\u2011claude Gavin, Motomu Tanaka &amp; Anthony D. Ho<br>Scientific Reports | (2020) 10:11597 | https:\/\/doi.org\/10.1038\/s41598-020-68396-2www.nature.com\/scientificreports<\/p>\n\n\n\n<p><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31076446\">Hepatic leukemia factor is a novel leukemic stem cell regulator in DNMT3A, NPM1, and FLT3-ITD triple-mutated AML.<\/a><br>Garg S, Reyes-Palomares A, He L, Bergeron A, Lavall\u00e9e VP, Lemieux S, Gendron P, Rohde C, Xia J, Jagdhane P, M\u00fcller-Tidow C, Lipka DB, Imren S, Humphries RK, Waskow C, Vick B, Jeremias I, Richard-Carpentier G, H\u00e9bert J, Sauvageau G, Zaugg J, Barab\u00e9 F, Pabst C.<br>Blood. 2019 May 10. pii: blood.2018862383. doi: 10.1182\/blood.2018862383. [Epub ahead of print]<br>PMID: 31076446<\/p>\n\n\n\n<p><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30275468\">Cell-specific proteome analyses of human bone marrow reveal molecular features of age-dependent functional decline.<\/a><br>Hennrich ML, Romanov N, Horn P, Jaeger S, Eckstein V, Steeples V, Ye F, Ding X, Poisa-Beiro L, Lai MC, Lang B, Boultwood J, Luft T, Zaugg JB, Pellagatti A, Bork P, Aloy P, Gavin AC, Ho AD.<br>Nat Commun. 2018 Oct 1;9(1):4004. doi: 10.1038\/s41467-018-06353-4. PMID:30275468<\/p>\n\n\n\n<p><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28650479\">AML1-ETO requires enhanced C\/D box snoRNA\/RNP formation to induce self-renewal and leukaemia.<\/a><br>Zhou F, Liu Y, Rohde C, Pauli C, Gerloff D, K\u00f6hn M, Misiak D, B\u00e4umer N, Cui C, G\u00f6llner S, Oellerich T, Serve H, Garcia-Cuellar MP, Slany R, Maciejewski JP, Przychodzen B, Seliger B, Klein HU, Bartenhagen C, Berdel WE, Dugas M, Taketo MM, Farouq D, Schwartz S, Regev A, H\u00e9bert J, Sauvageau G, Pabst C, H\u00fcttelmaier S, M\u00fcller-Tidow C.<br>Nat Cell Biol. 2017 Jul;19(7):844-855. doi: 10.1038\/ncb3563. Epub 2017 Jun 26. PMID:28650479<\/p>\n\n\n\n<p><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27941792\">Loss of the histone methyltransferase EZH2 induces resistance to multiple drugs in acute myeloid leukemia.<\/a><br>G\u00f6llner S, Oellerich T, Agrawal-Singh S, Schenk T, Klein HU, Rohde C, Pabst C, Sauer T, Lerdrup M, Tavor S, St\u00f6lzel F, Herold S, Ehninger G, K\u00f6hler G, Pan KT, Urlaub H, Serve H, Dugas M, Spiekermann K, Vick B, Jeremias I, Berdel WE, Hansen K, Zelent A, Wickenhauser C, M\u00fcller LP, Thiede C, M\u00fcller-Tidow C.<br>Nat Med. 2017 Jan;23(1):69-78. doi: 10.1038\/nm.4247. Epub 2016 Dec 12. PMID: 27941792&nbsp;<\/p>\n\n\n\n<p><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26834243\">GPR56 identifies primary human acute myeloid leukemia cells with high repopulating potential in vivo.<\/a><br>Pabst C, Bergeron A, Lavall\u00e9e VP, Yeh J, Gendron P, Norddahl GL, Krosl J, Boivin I, Deneault E, Simard J, Imren S, Boucher G, Eppert K, Herold T, Bohlander SK, Humphries K, Lemieux S, H\u00e9bert J, Sauvageau G, Barab\u00e9 F.<br>Blood. 2016 Apr 21;127(16):2018-27. doi: 10.1182\/blood-2015-11-683649. Epub 2016 Feb 1. PMID: 26834243<\/p>\n\n\n\n<p><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27153574\">SNPhood: investigate, quantify and visualise the epigenomic neighbourhood of SNPs using NGS data.<\/a><br>Arnold C, Bhat P, Zaugg JB.<br>Bioinformatics. 2016 Aug 1;32(15):2359-60. doi: 10.1093\/bioinformatics\/btw127. Epub 2016 Mar 26. PMID:27153574<\/p>\n\n\n\n<p><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26300125\">Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions.<\/a><br>Grubert F, Zaugg JB, Kasowski M, Ursu O, Spacek DV, Martin AR, Greenside P, Srivas R, Phanstiel DH, Pekowska A, Heidari N, Euskirchen G, Huber W, Pritchard JK, Bustamante CD, Steinmetz LM, Kundaje A, Snyder M.<br>Cell. 2015 Aug 27;162(5):1051-65. doi: 10.1016\/j.cell.2015.07.048. Epub 2015 Aug 20. PMID: 26300125<\/p>\n\n<\/div>\n<\/details>\n\n\n\n<details  class=\"vf-details\" id=\"group-members\"  >\n<summary class=\"vf-details--summary\">\nGroup members<\/summary>\n<div class=\"acf-innerblocks-container\">\n\n<p><strong>Shifaa Abdin, PhD<br><\/strong>Postdoc<br>M\u00fcller-Tidow&nbsp;Group, Department of Internal Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Hospital<br>Phone: +49 6221 56 34138<br><a href=\"mailto:Shifaa.Abdin@med.uni-heidelberg.de\">Shifaa.Abdin@med.uni-heidelberg.de<\/a><\/p>\n\n\n\n<p><strong>Annette Becker, M.A.<br><\/strong>Science Coordinator<br>M\u00fcller-Tidow&nbsp;Group, Department of Internal Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Hospital<br>Phone: +49 6221 56 34138<br><a href=\"mailto:annette.becker@med.uni-heidelberg.de\">annette.becker@med.uni-heidelberg.de<\/a><\/p>\n\n\n\n<p><strong>Maximilian&nbsp;Blank, MD<br><\/strong>Physician Scientist<br>M\u00fcller-Tidow&nbsp; Group, Department of Internal Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Hospital<br>Phone: +49 6221 56 xxxx<br><a href=\"mailto:MaximilianFelix.Blank@med.uni-heidelberg.de\" target=\"_blank\" rel=\"noreferrer noopener\">MaximilianFelix.Blank@med.uni-heidelberg.de<\/a><\/p>\n\n\n\n<p><strong>Josephine Brysting<\/strong><br>PhD student (EMBL International PhD Programme \u2013 EIPP)<br>M\u00fcller-Tidow&nbsp; Group, Department of Internal Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Hospital<br>Phone: +49 6221 56 37487<br><a href=\"mailto:josephine.brysting@embl.de\">josephine.brysting@embl.de<\/a><\/p>\n\n\n\n<p><strong>Sandra F\u00f6rmer<br><\/strong>Technician<br>M\u00fcller-Tidow&nbsp;Group, Department of Internal Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Hospital<br>Phone: +49 6221 56 34812<br><a href=\"mailto:sandra.foermer@med.uni-heidelberg.de\">sandra.foermer@med.uni-heidelberg.de<\/a><\/p>\n\n\n\n<p><strong>Stefanie G\u00f6llner, PhD<\/strong><br>Senior Scientist<br>M\u00fcller-Tidow&nbsp;Group, Department of Internal Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Hospital<br>Phone: +49 6221 56 34138<br><a href=\"mailto:Stefanie.Goellner@med.uni-heidelberg.de\">Stefanie.Goellner@med.uni-heidelberg.de<\/a><\/p>\n\n\n\n<p><strong>Michael H\u00f6tker, MD<\/strong><br>Physician Scientist<br>M\u00fcller-Tidow&nbsp; Group, Department of Internal Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Hospital<br>Phone: +49 6221 56 xxxx<br><a href=\"mailto:MichaelHoetker@med.uni-heidelberg.de\" target=\"_blank\" rel=\"noreferrer noopener\">MichaelHoetker@med.uni-heidelberg.de<\/a><\/p>\n\n\n\n<p><strong>Stefanie Hofmann<br><\/strong>Technician dFCCU (decentral Flow Cytometry Core Unit)<br>M\u00fcller-Tidow&nbsp;Group, Department of Internal Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Hospital<br>Phone: +49 6221 56 34138<br><a href=\"mailto:Stefanie.Hofmann@med.uni-heidelberg.de\">Stefanie.Hofmann@med.uni-heidelberg.de<\/a> <\/p>\n\n\n\n<p><strong>Maike Janssen, MD<\/strong><br>Physician<br>M\u00fcller-Tidow&nbsp; Group, Department of Internal Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Hospital<br>Phone: +49 6221 56 39562<br><a href=\"mailto:maike.janssen@med.uni-heidelberg.de\">maike.janssen@med.uni-heidelberg.de<\/a><\/p>\n\n\n\n<p><strong>Yi Liu, PhD<\/strong><br>Postdoc<br>M\u00fcller-Tidow&nbsp; Group, Department of Internal Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Hospital<br>Phone: +49 6221 56 37487<br><a href=\"mailto:yi.liu@med.uni-heidelberg.de\">yi.liu@med.uni-heidelberg.de<\/a><\/p>\n\n\n\n<p><strong>Annika Lonati<br><\/strong>Technician<br>M\u00fcller-Tidow&nbsp; Group, Department of Internal Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Hospital<br>Phone: +49 6221 56 32595<br><a href=\"mailto:annika.lonati@med.uni-heidelberg.de\">annika.lonati@med.uni-heidelberg.de<\/a><\/p>\n\n\n\n<p><strong>Michelle Lotze<br><\/strong>Technician<br>M\u00fcller-Tidow&nbsp; Group, Department of Internal Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Hospital<br>Phone: +49 6221 56 34086<br><a href=\"mailto:michelle.lotze@med.uni-heidelberg.de\">michelle.lotze@med.uni-heidelberg.de<\/a><\/p>\n\n\n\n<p><strong>Anne Kathrin Merbach, PhD<\/strong><br>Postdoc<br>M\u00fcller-Tidow&nbsp; Group, Department of Internal Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Hospital<br>Phone: +49 6221 56 37487<br><a href=\"mailto:AnneKathrin.Merbach@med.uni-heidelberg.de\">AnneKathrin.Merbach@med.uni-heidelberg.de<\/a><\/p>\n\n\n\n<p><strong>Moritz Cornelius Pauli, MD<\/strong><br>Physician Scientist<br>M\u00fcller-Tidow&nbsp; Group, Department of Internal Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Hospital<br>Phone: +49 6221 56 32254<br><a href=\"mailto:MoritzCornelius.Pauli@med.uni-heidelberg.de\">MoritzCornelius.Pauli@med.uni-heidelberg.de<\/a><\/p>\n\n\n\n<p><strong>Karin Prummel, PhD<\/strong><br>Postdoc<br>Zaugg Group, EMBL<br>Phone: +49 6221 387 8xxx<br><a href=\"mailto:mangching.lai@embl.de\"><\/a><a href=\"mailto:karin.prummel@embl.de\">karin.prummel@embl.de<\/a><\/p>\n\n\n\n<p><strong>Jonas Rauchhaus<\/strong><br>PhD student (EMBL International PhD Programme \u2013 EIPP)<br>Zaugg Group<br><a href=\"mailto:jonas.rauchhaus@embl.de\">jonas.rauchhaus@embl.de<\/a><\/p>\n\n\n\n<p><strong>Christian Rohde, PhD<\/strong><br>Postdoc<br>M\u00fcller-Tidow&nbsp; Group, Department of Internal Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Hospital<br>Phone: +49 6221 56 37487<br><a href=\"mailto:christian.rohde@med.uni-heidelberg.de\">christian.rohde@med.uni-heidelberg.de<\/a><\/p>\n\n\n\n<p><strong>Linda Rothenburger<br><\/strong>Technician dFCCU (decentral Flow Cytometry Core Unit)<br>M\u00fcller-Tidow&nbsp;Group, Department of Internal Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Hospital<br>Phone: +49 6221 56 34138<br><a href=\"mailto:Linda.Rothenburger@med.uni-heidelberg.de\">Linda.Rothenburger@med.uni-heidelberg.de<\/a> <\/p>\n\n\n\n<p><strong>Aline S\u00e4hr<br><\/strong>Technician<br>M\u00fcller-Tidow&nbsp; Group, Department of Internal Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Hospital<br>Phone: +49 6221 56 32595<br><a href=\"mailto:aline.saehr@med.uni-heidelberg.de\">aline.saehr@med.uni-heidelberg.de<\/a><\/p>\n\n\n\n<p><strong>Lena Schlautmann, PhD<\/strong><br>Postdoc<br>Pabst Group, Department of Internal Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Hospital<br>Phone: +49 6221 56 37604<br><a href=\"mailto:Lena.Schlautmann@med.uni-heidelberg.de\">Lena.Schlautmann@med.uni-heidelberg.de<\/a><\/p>\n\n\n\n<p><strong>Viral Shah, PhD<\/strong><br>Postdoc<br>M\u00fcller-Tidow&nbsp;Group, Department of Internal Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Hospital<br>Phone: +49 6221 56 34138<br><a href=\"mailto:Viral.Shah@med.uni-heidelberg.de\">Viral.Shah@med.uni-heidelberg.de<\/a> <\/p>\n\n\n\n<p><strong>Andrei Stapran<\/strong><br>PhD student (EMBL International PhD Programme \u2013 EIPP)<br>Zaugg Group<br><a href=\"https:\/\/www.embl.org\/about\/info\/mmpu\/members\/stem-cell-niche-networks\/andrei.stapran@embl.de\" target=\"_blank\" rel=\"noreferrer noopener\">andrei.stapran@embl.de<\/a><\/p>\n\n\n\n<p><strong>Jia Yan<\/strong><br>PhD student (EMBL International PhD Programme \u2013 EIPP)<br>M\u00fcller-Tidow&nbsp;Group, Department of Internal Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Hospital<br><a href=\"mailto:jia.yan@embl.de\" target=\"_blank\" rel=\"noreferrer noopener\">jia.yan@embl.de<\/a><\/p>\n\n\n\n<p><strong>Fengbiao Zhou, PhD<\/strong><br>Postdoc<br>M\u00fcller-Tidow&nbsp; Group, Department of Internal Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Hospital<br>Phone: +49 6221 56 37487<br><a href=\"mailto:fengbiao.zhou@med.uni-heidelberg.de\">fengbiao.zhou@med.uni-heidelberg.de<\/a><\/p>\n\n\n\n<p><strong>Julian Zoller, MD<\/strong><br>Physician<br>M\u00fcller-Tidow&nbsp; Group, Department of Internal Medicine V, Hematology, Oncology and Rheumatology, Heidelberg University Hospital<br>Phone: +49 6221 56 37487<br><a href=\"mailto:Julian.Zoller@med.uni-heidelberg.de\">Julian.Zoller@med.uni-heidelberg.de<\/a><\/p>\n\n<\/div>\n<\/details>\n\n\n\n<details  class=\"vf-details\" id=\"former-members\"  >\n<summary class=\"vf-details--summary\">\nFormer members<\/summary>\n<div class=\"acf-innerblocks-container\">\n\n<p><strong>Birgit Besenbeck, <\/strong>Technician<\/p>\n\n\n\n<p><strong>Swati Garg, PhD,<\/strong> Postdoc<\/p>\n\n\n\n<p><strong>Volker Eckstein, PhD<\/strong>, Head of dFCCU (decentral Flow Cytometry Core Unit)<\/p>\n\n\n\n<p><strong>Anne-Claude Gavin<\/strong>, PhD, MMPU Group Leader<\/p>\n\n\n\n<p><strong>Ricardo Grieshaber Bouyer, MD, <\/strong>Physician Scientist<\/p>\n\n\n\n<p><strong>Dirk Hart, PhD<\/strong> Postdoc<\/p>\n\n\n\n<p><strong>Lixiazi He, PhD<\/strong>, Postdoc<\/p>\n\n\n\n<p><strong>Daniel Heid,<\/strong> PhD student (EMBL International PhD Programme \u2013 EIPP)<\/p>\n\n\n\n<p><strong>Marco Hennrich<\/strong>, Mass Spectrometrist<\/p>\n\n\n\n<p><strong>Anthony D. Ho<\/strong>, MD, FRCPC, Emeritus MMPU group leader<\/p>\n\n\n\n<p><strong>Karin Huber<\/strong>, MD Student<\/p>\n\n\n\n<p><strong>Prarabdha Jagdhane<\/strong>, PhD Student<\/p>\n\n\n\n<p><strong>Saskia Kany, <\/strong>Technician<\/p>\n\n\n\n<p><strong>Sara Lobato Moreno<\/strong>, PhD student (EMBL International PhD Programme \u2013 EIPP)<\/p>\n\n\n\n<p><strong>Julius Luetke<\/strong>, MD Student (JCF\/HRCMM)<\/p>\n\n\n\n<p><strong>Brian Mang Ching Lai, PhD<\/strong>, Postdoc<\/p>\n\n\n\n<p><strong>Anna Mathioudaki<\/strong>, PhD student (EMBL International PhD Programme \u2013 EIPP)<\/p>\n\n\n\n<p><strong>Uta Meyer zum B\u00fcschenfelde<\/strong>, PhD, Postdoc<\/p>\n\n\n\n<p><strong>Laura Poisa Beiro, PhD<\/strong>, Postdoc (Ho group)<\/p>\n\n\n\n<p><strong>Mariana Ruiz-Velasco,<\/strong> PhD student (EMBL International PhD Programme \u2013 EIPP), Postdoc<\/p>\n\n\n\n<p><strong>Xizhe Wang<\/strong>, MD Student<\/p>\n\n\n\n<p><strong>Jianglong Xia<\/strong>, MD Student<\/p>\n\n\n\n<p><strong>Haiyang Yun, PhD<\/strong>, Postdoc<\/p>\n\n\n\n<p><strong>Duoduo Zhao<\/strong>, MD Student<\/p>\n\n<\/div>\n<\/details>\n\n<\/div>\n<\/div>\n\n\n<div><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<article class=\"vf-card vf-card--brand vf-card--bordered vf-u-margin__bottom--800\" default>\n  \n  <div class=\"vf-card__content | vf-stack vf-stack--400\">\n          <h3 class=\"vf-card__heading\">\n        \n        On this page\n              <\/h3>\n    \n    \n          <p class=\"vf-card__text\"><ul>\r\n \t<li>Our research interest<\/li>\r\n \t<li>Background<\/li>\r\n \t<li>Goals<\/li>\r\n \t<li>Important publications<\/li>\r\n \t<li>Group members<\/li>\r\n \t<li>Former members<\/li>\r\n<\/ul><\/p>\n      <\/div>\n<\/article>\n\n\n\n<figure class=\"vf-figure wp-block-image  | vf-figure--align vf-figure--align-inline-start   size-full\"><img loading=\"lazy\" decoding=\"async\" width=\"180\" height=\"223\" class=\"vf-figure__image\" src=\"https:\/\/www.embl.org\/about\/info\/mmpu\/wp-content\/uploads\/2020\/10\/zaugg-et-al.jpg\" alt=\"\" class=\"wp-image-280\"\/><figcaption class=\"vf-figure__caption\">Judith Zaugg, Anthony D. Ho, Carsten M\u00fcller-Tidow, Anne-Claude Gavin and Caroline Pabst<\/figcaption><\/figure>\n\n<\/div>\n<\/div>\n<\/div>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":1,"featured_media":0,"parent":56,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"template-title-left-aligned.php","meta":{"_acf_changed":false,"footnotes":""},"embl_taxonomy":[],"class_list":["post-100","page","type-page","status-publish","hentry"],"acf":[],"embl_taxonomy_terms":[],"_links":{"self":[{"href":"https:\/\/www.embl.org\/about\/info\/mmpu\/wp-json\/wp\/v2\/pages\/100","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.embl.org\/about\/info\/mmpu\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.embl.org\/about\/info\/mmpu\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.embl.org\/about\/info\/mmpu\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.embl.org\/about\/info\/mmpu\/wp-json\/wp\/v2\/comments?post=100"}],"version-history":[{"count":44,"href":"https:\/\/www.embl.org\/about\/info\/mmpu\/wp-json\/wp\/v2\/pages\/100\/revisions"}],"predecessor-version":[{"id":17165,"href":"https:\/\/www.embl.org\/about\/info\/mmpu\/wp-json\/wp\/v2\/pages\/100\/revisions\/17165"}],"up":[{"embeddable":true,"href":"https:\/\/www.embl.org\/about\/info\/mmpu\/wp-json\/wp\/v2\/pages\/56"}],"wp:attachment":[{"href":"https:\/\/www.embl.org\/about\/info\/mmpu\/wp-json\/wp\/v2\/media?parent=100"}],"wp:term":[{"taxonomy":"embl_taxonomy","embeddable":true,"href":"https:\/\/www.embl.org\/about\/info\/mmpu\/wp-json\/wp\/v2\/embl_taxonomy?post=100"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}