{"id":962,"date":"2023-10-20T16:53:43","date_gmt":"2023-10-20T16:53:43","guid":{"rendered":"https:\/\/www.embl.org\/about\/info\/life-science-alliance\/?page_id=962"},"modified":"2023-11-04T00:01:27","modified_gmt":"2023-11-04T00:01:27","slug":"modern-statistics-for-modern-biology","status":"publish","type":"page","link":"https:\/\/www.embl.org\/about\/info\/life-science-alliance\/research\/modern-statistics-for-modern-biology\/","title":{"rendered":"Modern Statistics for Modern Biology"},"content":{"rendered":"\n<div class=\"vf-grid | vf-grid__col-3\"><div class=\"vf-grid__col--span-2\"><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<h2 class=\"wp-block-heading\">Background<\/h2>\n\n\n\n<p>Biology has become a data-rich science. There are rapid developments of&nbsp;new technologies, and the data we can now gather about biological systems are large, heterogeneous and complex. We need to be able to&nbsp; efficiently explore the data and draw sound conclusions in a transparent and reproducible manner. The field of statistics&nbsp; increasingly makes use of, and is driven by, computational methods,&nbsp; including resampling, simulations. As a result, exploratory data analysis and visualization, which are ever important, are becoming increasingly accessible.<\/p>\n\n\n\n<hr class=\"vf-divider\">\n\n\n\n<h2 class=\"wp-block-heading\">Project<\/h2>\n\n\n\n<h3 class=\"wp-block-heading\">Modern Statistics for Modern Biology<\/h3>\n\n\n\n<p>The Holmes and Huber labs collaborate on developing statistical tools for large multi-layer data analyses, &nbsp;for integrating large, heterogeneous biological data, and for finding applications in molecular medicine. We aim to deliver tools that are easy to use by domain-scientists to analyze their own data &#8211; for instance by providing the tools in the form of R \/ Bioconductor packages.<\/p>\n\n\n\n<p>Together we want to help the next generation of biologists understand the &#8220;black box&#8221; of statistics by training them in quantitative statistical methods. We have written a textbook (<a href=\"http:\/\/web.stanford.edu\/class\/bios221\/book\/\" target=\"_blank\" rel=\"noreferrer noopener\">Modern Statistics for Modern Biology<\/a>)&nbsp;and together, we teach a summer course (<a href=\"http:\/\/web.stanford.edu\/class\/bios221\/\" target=\"_blank\" rel=\"noreferrer noopener\">Stats 366 &#8211; Bios 221<\/a>) at Stanford. We keep further developing these materials, to take up new scientific developments (e.g.&nbsp; new data types), new methods, or new statistical or computational ideas.&nbsp;<\/p>\n\n\n\n<hr class=\"vf-divider\">\n\n\n\n<h2 class=\"wp-block-heading\">Find out more:<\/h2>\n\n\n\n<p>Interested in developing computational tools for statistical analysis? Do you want to learn more about this great resource for biologists?&nbsp;<a rel=\"noreferrer noopener\" href=\"mailto:stanford@embl.de\" target=\"_blank\">Get in touch<\/a>, we would love to hear from you!<\/p>\n\n<\/div>\n<\/div>\n\n\n<div class=\"\"><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<h3 class=\"wp-block-heading\">Collaborators:<\/h3>\n\n\n\n<article class=\"vf-profile vf-profile--very-easy vf-profile--medium vf-profile--inline | vf-u-margin__bottom--400\">\n\n    <img decoding=\"async\" width=\"270\" height=\"300\" src=\"https:\/\/www.embl.org\/about\/info\/life-science-alliance\/wp-content\/uploads\/2023\/10\/huber_wolfgang.jpg\" class=\"vf-profile__image\" alt=\"Headshot Wolfgang Huber\" loading=\"lazy\" itemprop=\"image\" \/>\n    <h3 class=\"vf-profile__title\" >\n                    <a href=\"https:\/\/www.embl.org\/groups\/huber\/\" target=\"_self\" class=\"vf-profile__link\">Huber Group<\/a>\n            <\/h3>\n    \n                <p class=\"vf-profile__text\" >\n                EMBL            <\/p>\n    \n    \n      \n\n    \n<\/article>\n\n\n\n<article class=\"vf-profile vf-profile--very-easy vf-profile--medium vf-profile--inline | vf-u-margin__bottom--400\">\n\n    <img decoding=\"async\" width=\"220\" height=\"148\" src=\"https:\/\/www.embl.org\/about\/info\/life-science-alliance\/wp-content\/uploads\/2023\/10\/holmes.png\" class=\"vf-profile__image\" alt=\"Headshot Susan Holmes\" loading=\"lazy\" itemprop=\"image\" \/>\n    <h3 class=\"vf-profile__title\" >\n                    <a href=\"https:\/\/susan.su.domains\" target=\"_self\" class=\"vf-profile__link\">Holmes Lab <\/a>\n            <\/h3>\n    \n                <p class=\"vf-profile__text\" >\n                Stanford            <\/p>\n    \n    \n      \n\n    \n<\/article>\n\n\n\n<article class=\"vf-card vf-card--brand vf-card--bordered vf-u-margin__bottom--800\" default>\n  \n  <div class=\"vf-card__content | vf-stack vf-stack--400\">\n          <h3 class=\"vf-card__heading\">\n                  <a class=\"vf-card__link\" href=\"https:\/\/web.stanford.edu\/class\/bios221\/book\/\" target=\"_blank\">\n        \n        Modern Statistics for Modern Biology \n                  <svg aria-hidden=\"true\" class=\"vf-card__heading__icon | vf-icon vf-icon-arrow--inline-end\" width=\"1em\" height=\"1em\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\">\n            <path d=\"M0 12c0 6.627 5.373 12 12 12s12-5.373 12-12S18.627 0 12 0C5.376.008.008 5.376 0 12zm13.707-5.209l4.5 4.5a1 1 0 010 1.414l-4.5 4.5a1 1 0 01-1.414-1.414l2.366-2.367a.25.25 0 00-.177-.424H6a1 1 0 010-2h8.482a.25.25 0 00.177-.427l-2.366-2.368a1 1 0 011.414-1.414z\" fill=\"currentColor\" fill-rule=\"nonzero\"><\/path>\n          <\/svg>\n        <\/a>\n              <\/h3>\n    \n    \n          <p class=\"vf-card__text\">Access your copy for free!<\/p>\n      <\/div>\n<\/article>\n\n\n\n<article class=\"vf-card vf-card--brand vf-card--bordered vf-u-margin__bottom--800\" default>\n  \n  <div class=\"vf-card__content | vf-stack vf-stack--400\">\n          <h3 class=\"vf-card__heading\">\n                  <a class=\"vf-card__link\" href=\"https:\/\/www.embl.org\/about\/info\/life-science-alliance\/2018\/05\/statistician-biologist-interdisciplinarity-at-its-best-qa-with-susan-homes-and-wolfgang-huber\/\" target=\"_blank\">\n        \n        Q&amp;A with Susan and Wolfgang\n                  <svg aria-hidden=\"true\" class=\"vf-card__heading__icon | vf-icon vf-icon-arrow--inline-end\" width=\"1em\" height=\"1em\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\">\n            <path d=\"M0 12c0 6.627 5.373 12 12 12s12-5.373 12-12S18.627 0 12 0C5.376.008.008 5.376 0 12zm13.707-5.209l4.5 4.5a1 1 0 010 1.414l-4.5 4.5a1 1 0 01-1.414-1.414l2.366-2.367a.25.25 0 00-.177-.424H6a1 1 0 010-2h8.482a.25.25 0 00.177-.427l-2.366-2.368a1 1 0 011.414-1.414z\" fill=\"currentColor\" fill-rule=\"nonzero\"><\/path>\n          <\/svg>\n        <\/a>\n              <\/h3>\n    \n          <p class=\"vf-card__subheading\">14 May 2018<\/p>\n    \n      <\/div>\n<\/article>\n\n<\/div>\n<\/div>\n<\/div>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":7,"featured_media":0,"parent":128,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"template-title-left-aligned.php","meta":{"_acf_changed":false,"footnotes":""},"embl_taxonomy":[],"class_list":["post-962","page","type-page","status-publish","hentry"],"acf":[],"embl_taxonomy_terms":[],"_links":{"self":[{"href":"https:\/\/www.embl.org\/about\/info\/life-science-alliance\/wp-json\/wp\/v2\/pages\/962","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.embl.org\/about\/info\/life-science-alliance\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.embl.org\/about\/info\/life-science-alliance\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.embl.org\/about\/info\/life-science-alliance\/wp-json\/wp\/v2\/users\/7"}],"replies":[{"embeddable":true,"href":"https:\/\/www.embl.org\/about\/info\/life-science-alliance\/wp-json\/wp\/v2\/comments?post=962"}],"version-history":[{"count":30,"href":"https:\/\/www.embl.org\/about\/info\/life-science-alliance\/wp-json\/wp\/v2\/pages\/962\/revisions"}],"predecessor-version":[{"id":1691,"href":"https:\/\/www.embl.org\/about\/info\/life-science-alliance\/wp-json\/wp\/v2\/pages\/962\/revisions\/1691"}],"up":[{"embeddable":true,"href":"https:\/\/www.embl.org\/about\/info\/life-science-alliance\/wp-json\/wp\/v2\/pages\/128"}],"wp:attachment":[{"href":"https:\/\/www.embl.org\/about\/info\/life-science-alliance\/wp-json\/wp\/v2\/media?parent=962"}],"wp:term":[{"taxonomy":"embl_taxonomy","embeddable":true,"href":"https:\/\/www.embl.org\/about\/info\/life-science-alliance\/wp-json\/wp\/v2\/embl_taxonomy?post=962"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}