{"id":221341,"date":"2025-06-25T15:08:02","date_gmt":"2025-06-25T14:08:02","guid":{"rendered":"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/?post_type=vf_event&#038;p=221341"},"modified":"2026-03-25T13:36:05","modified_gmt":"2026-03-25T13:36:05","slug":"dat26-01","status":"publish","type":"vf_event","link":"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/events\/dat26-01\/","title":{"rendered":"Whole transcriptome data analysis"},"content":{"rendered":"\n<div class=\"vf-tabs\"><ul class=\"vf-tabs__list\" data-vf-js-tabs=\"true\"><li class=\"vf-tabs__item\"><a class=\"vf-tabs__link\" href=\"#vf-tabs__section-overview\" data-vf-js-location-nearest-activation-target=\"\">Overview<\/a><\/li><li class=\"vf-tabs__item\"><a class=\"vf-tabs__link\" href=\"#vf-tabs__section-speakers-and-trainers\" data-vf-js-location-nearest-activation-target=\"\">Speakers, trainers and staff<\/a><\/li><li class=\"vf-tabs__item\"><a class=\"vf-tabs__link\" href=\"#vf-tabs__section-programme\" data-vf-js-location-nearest-activation-target=\"\">Preliminary programme<\/a><\/li><li class=\"vf-tabs__item\"><a class=\"vf-tabs__link\" href=\"#vf-tabs__section-bb16a4f5-160e-4468-9313-19a500d91493\" data-vf-js-location-nearest-activation-target=\"\">Practical information<\/a><\/li><li class=\"vf-tabs__item\"><a class=\"vf-tabs__link\" href=\"#vf-tabs__section-sponsors\" data-vf-js-location-nearest-activation-target=\"\">Sponsors<\/a><\/li><li class=\"vf-tabs__item\"><a class=\"vf-tabs__link\" href=\"#vf-tabs__section-media-kit\" data-vf-js-location-nearest-activation-target=\"\">Media kit<\/a><\/li><\/ul><div class=\"vf-tabs-content\" data-vf-js-tabs-content=\"true\">\n<section class=\"vf-tabs__section\" id=\"vf-tabs__section-overview\"><h2 class=\"vf-u-sr-only\">Overview<\/h2>\n<p><\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Course overview<\/h2>\n\n\n\n<p>This course will teach biological researchers how to analyse biological data sets using open-source software.&nbsp;<\/p>\n\n\n\n<p>In this course, AI is primarily used to support beginners in writing R scripts. Before attending the course, beginners can become familiar with AI-based programming assistance through a micro-credential course (MOOC) developed by the course organizers. (<a href=\"https:\/\/www.google.com\/url?q=https:\/\/www.edvance.it\/edvance\/app\/courseDetails\/591&amp;source=gmail-imap&amp;ust=1770713035000000&amp;usg=AOvVaw3r_uGvrOf1B867gjm4XHhL\">https:\/\/www.edvance.it\/edvance\/app\/courseDetails\/591<\/a>)<\/p>\n\n\n\n<p>The course provides an introduction to the fundamental approaches for analyzing bulk RNAseq, single-cell RNAseq, and single-cell multi-omics scRNAseq\/ATACseq.<\/p>\n\n\n\n<p>Most of the analysis will be performed with docker4seq and rCASC packages, which were developed to facilitate the use of computing demanding applications in the field of NGS data analysis. Docker4seq and rCASC packages use docker containers that embed demanding computing tasks (e.g. short reads mapping) into isolated containers.<\/p>\n\n\n\n<p>This approach provides multiple advantages: the user does not need to install all the software on its local server, the results generated by different containers can be organised in pipelines, and reproducible research is guarantee by the possibility of sharing the docker images used for the analysis.<\/p>\n\n\n\n<p>Computers for hands-on exercises will be provided along with demo data sets.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Audience<\/h2>\n\n\n\n<p>This course was developed for biological researchers as the intended audience. Basic knowledge of massively parallel sequencing (MPS) is desirable, however R-coding skills and deep knowledge of statistics are not necessary.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\">What past participants say about the course<\/h2>\n\n\n\n<p><em>&#8220;I came with high expectations and they were fully met. The balance between theory and hands-on work was perfect and the support was amazing.&#8221;<\/em> &#8211; Janno Harjes, Axolabs GmbH,  Germany<\/p>\n\n\n\n<p><em>&#8220;This course offers an exceptionally clear and accessible introduction to RNA-seq analysis, perfect for researchers new to bioinformatics. The well-structured content and hands-on approach offer a solid foundation for independently analyzing RNA-seq data using open access and user friendly computational tools.&#8221;<\/em> \u2014 Pedro Perdig\u00e3o, Center for Neuroscience and Cell Biology, University of Coimbra, Portugal<\/p>\n\n\n\n<p><\/p>\n<\/section>\n\n\n\n<section class=\"vf-tabs__section\" id=\"vf-tabs__section-speakers-and-trainers\"><h2>Speakers, trainers and staff<\/h2>\n<div class=\"embl-grid\"><div><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<article class=\"vf-profile vf-profile--very-easy vf-profile--medium vf-profile--block | vf-u-margin__bottom--400\">\n\n    <img decoding=\"async\" width=\"300\" height=\"291\" src=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/Luca-Alessandri-300x291.jpg\" class=\"vf-profile__image\" alt=\"\" loading=\"lazy\" itemprop=\"image\" srcset=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/Luca-Alessandri-300x291.jpg 300w, https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/Luca-Alessandri.jpg 340w\" sizes=\"auto, (max-width: 300px) 100vw, 300px\" \/>\n    <h3 class=\"vf-profile__title\" style=\"text-align: center;\">\n                    Luca Alessandri            <\/h3>\n    \n                <p class=\"vf-profile__text\" style=\"text-align: center;\">\n                University of Turin            <\/p>\n                <p class=\"vf-profile__text\" style=\"text-align: center;\">\n                Italy            <\/p>\n    \n    \n      \n\n    \n<\/article>\n\n<\/div>\n<\/div>\n\n\n<div><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<article class=\"vf-profile vf-profile--very-easy vf-profile--medium vf-profile--block | vf-u-margin__bottom--400\">\n\n    <img decoding=\"async\" width=\"226\" height=\"300\" src=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/2021\/05\/MarcoBeccuti-226x300.jpg\" class=\"vf-profile__image\" alt=\"\" loading=\"lazy\" itemprop=\"image\" srcset=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/2021\/05\/MarcoBeccuti-226x300.jpg 226w, https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/2021\/05\/MarcoBeccuti.jpg 597w\" sizes=\"auto, (max-width: 226px) 100vw, 226px\" \/>\n    <h3 class=\"vf-profile__title\" style=\"text-align: center;\">\n                    Marco Beccuti             <\/h3>\n    \n                <p class=\"vf-profile__text\" style=\"text-align: center;\">\n                University of Turin            <\/p>\n                <p class=\"vf-profile__text\" style=\"text-align: center;\">\n                Italy            <\/p>\n    \n    \n      \n\n    \n<\/article>\n\n<\/div>\n<\/div>\n\n\n<div><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<article class=\"vf-profile vf-profile--very-easy vf-profile--medium vf-profile--block | vf-u-margin__bottom--400\">\n\n    <img decoding=\"async\" width=\"115\" height=\"135\" src=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/Benes_Vladimir1-5.jpg\" class=\"vf-profile__image\" alt=\"\" loading=\"lazy\" itemprop=\"image\" \/>\n    <h3 class=\"vf-profile__title\" style=\"text-align: center;\">\n                    Vladimir Benes             <\/h3>\n    \n                <p class=\"vf-profile__text\" style=\"text-align: center;\">\n                EMBL Heidelberg            <\/p>\n                <p class=\"vf-profile__text\" style=\"text-align: center;\">\n                Germany            <\/p>\n    \n    \n      \n\n    \n<\/article>\n\n<\/div>\n<\/div>\n<\/div>\n\n\n\n<div class=\"embl-grid\"><div><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<article class=\"vf-profile vf-profile--very-easy vf-profile--medium vf-profile--block | vf-u-margin__bottom--400\">\n\n    <img decoding=\"async\" width=\"115\" height=\"135\" src=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/Calogero_Raffaele.jpg\" class=\"vf-profile__image\" alt=\"\" loading=\"lazy\" itemprop=\"image\" \/>\n    <h3 class=\"vf-profile__title\" style=\"text-align: center;\">\n                    Raffaele Calogero             <\/h3>\n    \n                <p class=\"vf-profile__text\" style=\"text-align: center;\">\n                University of Turin             <\/p>\n                <p class=\"vf-profile__text\" style=\"text-align: center;\">\n                 Italy            <\/p>\n    \n    \n      \n\n    \n<\/article>\n\n<\/div>\n<\/div>\n\n\n<div><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<article class=\"vf-profile vf-profile--very-easy vf-profile--medium vf-profile--block | vf-u-margin__bottom--400\">\n\n    <img decoding=\"async\" width=\"240\" height=\"300\" src=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/Maria-Luisa-Ratto-1-240x300.jpg\" class=\"vf-profile__image\" alt=\"\" loading=\"lazy\" itemprop=\"image\" srcset=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/Maria-Luisa-Ratto-1-240x300.jpg 240w, https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/Maria-Luisa-Ratto-1.jpg 244w\" sizes=\"auto, (max-width: 240px) 100vw, 240px\" \/>\n    <h3 class=\"vf-profile__title\" style=\"text-align: center;\">\n                    Maria Luisa Ratto            <\/h3>\n    \n                <p class=\"vf-profile__text\" style=\"text-align: center;\">\n                University of Turin            <\/p>\n                <p class=\"vf-profile__text\" style=\"text-align: center;\">\n                Italy            <\/p>\n    \n    \n      \n\n    \n<\/article>\n\n<\/div>\n<\/div>\n\n\n<div><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<\/div>\n<\/div>\n<\/div>\n\n\n\n<h2 class=\"wp-block-heading\">Scientific organisers<\/h2>\n\n\n\n<div class=\"embl-grid\"><div><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<article class=\"vf-profile vf-profile--very-easy vf-profile--medium vf-profile--block | vf-u-margin__bottom--400\">\n\n    <img decoding=\"async\" width=\"226\" height=\"300\" src=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/2021\/05\/MarcoBeccuti-226x300.jpg\" class=\"vf-profile__image\" alt=\"\" loading=\"lazy\" itemprop=\"image\" srcset=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/2021\/05\/MarcoBeccuti-226x300.jpg 226w, https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/2021\/05\/MarcoBeccuti.jpg 597w\" sizes=\"auto, (max-width: 226px) 100vw, 226px\" \/>\n    <h3 class=\"vf-profile__title\" style=\"text-align: center;\">\n                    Marco Beccuti             <\/h3>\n    \n                <p class=\"vf-profile__text\" style=\"text-align: center;\">\n                University of Turin            <\/p>\n                <p class=\"vf-profile__text\" style=\"text-align: center;\">\n                Italy            <\/p>\n    \n    \n      \n\n    \n<\/article>\n\n<\/div>\n<\/div>\n\n\n<div><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<article class=\"vf-profile vf-profile--very-easy vf-profile--medium vf-profile--block | vf-u-margin__bottom--400\">\n\n    <img decoding=\"async\" width=\"115\" height=\"135\" src=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/Benes_Vladimir1-5.jpg\" class=\"vf-profile__image\" alt=\"\" loading=\"lazy\" itemprop=\"image\" \/>\n    <h3 class=\"vf-profile__title\" style=\"text-align: center;\">\n                    Vladimir Benes             <\/h3>\n    \n                <p class=\"vf-profile__text\" style=\"text-align: center;\">\n                EMBL Heidelberg            <\/p>\n                <p class=\"vf-profile__text\" style=\"text-align: center;\">\n                Germany            <\/p>\n    \n    \n      \n\n    \n<\/article>\n\n<\/div>\n<\/div>\n\n\n<div><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<article class=\"vf-profile vf-profile--very-easy vf-profile--medium vf-profile--block | vf-u-margin__bottom--400\">\n\n    <img decoding=\"async\" width=\"115\" height=\"135\" src=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/Calogero_Raffaele.jpg\" class=\"vf-profile__image\" alt=\"\" loading=\"lazy\" itemprop=\"image\" \/>\n    <h3 class=\"vf-profile__title\" style=\"text-align: center;\">\n                    Raffaele Calogero             <\/h3>\n    \n                <p class=\"vf-profile__text\" style=\"text-align: center;\">\n                University of Turin             <\/p>\n                <p class=\"vf-profile__text\" style=\"text-align: center;\">\n                 Italy            <\/p>\n    \n    \n      \n\n    \n<\/article>\n\n<\/div>\n<\/div>\n<\/div>\n\n\n\n<div class=\"embl-grid\"><div><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<article class=\"vf-profile vf-profile--very-easy vf-profile--medium vf-profile--block | vf-u-margin__bottom--400\">\n\n    <img decoding=\"async\" width=\"115\" height=\"135\" src=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/Cordero-new-1.jpg\" class=\"vf-profile__image\" alt=\"\" loading=\"lazy\" itemprop=\"image\" \/>\n    <h3 class=\"vf-profile__title\" style=\"text-align: center;\">\n                    Francesca Cordero            <\/h3>\n    \n                <p class=\"vf-profile__text\" style=\"text-align: center;\">\n                University of Turin            <\/p>\n                <p class=\"vf-profile__text\" style=\"text-align: center;\">\n                Italy            <\/p>\n    \n    \n      \n\n    \n<\/article>\n\n<\/div>\n<\/div>\n\n\n<div><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<\/div>\n<\/div>\n\n\n<div><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<\/div>\n<\/div>\n<\/div>\n\n\n\n<p><\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Course Organiser<\/h2>\n\n\n\n<div class=\"embl-grid\"><div><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<article class=\"vf-profile vf-profile--very-easy vf-profile--medium vf-profile--block | vf-u-margin__bottom--400\">\n\n    <img decoding=\"async\" width=\"115\" height=\"135\" src=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/Inna1-1.jpg\" class=\"vf-profile__image\" alt=\"\" loading=\"lazy\" itemprop=\"image\" \/>\n    <h3 class=\"vf-profile__title\" style=\"text-align: center;\">\n                    Inna B\u00f6sselmann            <\/h3>\n    \n                <p class=\"vf-profile__text\" style=\"text-align: center;\">\n                EMBL Heidelberg            <\/p>\n                <p class=\"vf-profile__text\" style=\"text-align: center;\">\n                Germany            <\/p>\n    \n    \n      \n\n    \n<\/article>\n\n<\/div>\n<\/div>\n\n\n<div><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<\/div>\n<\/div>\n\n\n<div><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<\/div>\n<\/div>\n<\/div>\n\n\n\n<p><\/p>\n<\/section>\n\n\n\n<section class=\"vf-tabs__section\" id=\"vf-tabs__section-programme\"><h2>Preliminary programme<\/h2>\n<details  class=\"vf-details\" id=\"\"  >\n<summary class=\"vf-details--summary\">\nDay 1 &#8211; Sunday 7 June 2026<\/summary>\n<div class=\"acf-innerblocks-container\">\n\n<figure class=\"wp-block-table\"><table class=\"has-fixed-layout\"><thead><tr><th><strong>Time (Berlin\/Europe)<\/strong><\/th><th><strong>Speaker<\/strong><\/th><th><strong>Location<\/strong><\/th><\/tr><\/thead><tbody><tr><td>09:00 \u2013 09:30<\/td><td><strong>Welcome and course overview<br><\/strong>Vladimir Benes \u2013 EMBL Heidelberg, Germany<\/td><td><\/td><\/tr><tr><td>09:30 &#8211; 10:00<\/td><td><strong>Participants flash talks<\/strong><\/td><td>Courtyard A &amp; B room<\/td><\/tr><tr><td>10:00 \u2013 11:00<\/td><td><strong>RNA-seq, cool but is it that simple?<br><\/strong>Vladimir Benes \u2013 EMBL Heidelberg, Germany<\/td><td>Courtyard A &amp; B room<\/td><\/tr><tr><td>11:00 \u2013 11:30<\/td><td>Coffee break<\/td><td><\/td><\/tr><tr><td>11:30 \u2013 13:00<\/td><td><strong>RNA-seq, cool but is it that simple?<br><\/strong>Vladimir Benes \u2013 EMBL Heidelberg, Germany<\/td><td>Courtyard A &amp; B room<\/td><\/tr><tr><td>13:00-14:00<\/td><td>Lunch<\/td><td><\/td><\/tr><tr><td>14:00 \u2013 15:00<\/td><td><strong>Docker container and reproducibility<\/strong><br>Luca Alessandri \u2013 University of Turin, Italy<\/td><td>Courtyard A &amp; B room<\/td><\/tr><tr><td>15:00 \u2013 15:30<\/td><td><strong>Experimental design bulk RNAseq<\/strong><br>Raffaele Calogero \u2013 University of Turin, Italy<\/td><td>Courtyard A &amp; B room<\/td><\/tr><tr><td>15:30 &#8211; 16:00<\/td><td><strong>Coffee break<\/strong><\/td><td><\/td><\/tr><tr><td>16:00 &#8211; 18:00<\/td><td><strong>QC bulk RNAseq<\/strong><br>Raffaele Calogero \u2013 University of Turin, Italy<\/td><td>Courtyard A &amp; B room<\/td><\/tr><tr><td>18:00 &#8211; 19:00<\/td><td><strong><strong>Pizza dinner in the rooftop lounge<\/strong><\/strong><\/td><td>Rooftop lounge<\/td><\/tr><tr><td>19:00<\/td><td><strong>Bus to ISG Hotel<\/strong><\/td><td>ATC Entrance<\/td><\/tr><\/tbody><\/table><\/figure>\n\n<\/div>\n<\/details>\n\n\n\n<details  class=\"vf-details\" id=\"\"  >\n<summary class=\"vf-details--summary\">\nDay 2 &#8211; Monday 8 June 2026<\/summary>\n<div class=\"acf-innerblocks-container\">\n\n<figure class=\"wp-block-table\"><table class=\"has-fixed-layout\"><thead><tr><th><strong>Time (Berlin\/Europe)<\/strong><\/th><th><strong>Speaker<\/strong><\/th><th><strong>Location<\/strong><\/th><\/tr><\/thead><tbody><tr><td>08:40 &#8211; 09:00<\/td><td><strong>Bus from ISG to EMBL<\/strong><\/td><td>ISG Hotel entrance<\/td><\/tr><tr><td>09:00 \u2013 09:30<\/td><td><strong>Counting reads bulk RNAseq<br><\/strong>Francesca Corder \u2013 University of Turin, Italy<\/td><td>Computer Training Lab<\/td><\/tr><tr><td>09:30 &#8211; 10:00<\/td><td><strong>Counting reads miRNA<\/strong><br>Francesca Cordero &#8211; University of Turin, Italy<\/td><td>Computer Training Lab<\/td><\/tr><tr><td>10:00 &#8211; 10:30<\/td><td><strong>Coffee break<\/strong><\/td><td>ATC Foyer<\/td><\/tr><tr><td>10:30 &#8211; 12:00<\/td><td><strong>PCA a linear dimensionality reduction method<br><\/strong>Francesca Cordero \u2013 University of Turin, Italy<\/td><td>Computer Training Lab<\/td><\/tr><tr><td>12:00-13:00<\/td><td><strong>Lunch<\/strong><\/td><td>EMBL Canteen<\/td><\/tr><tr><td>13:00-14:30<\/td><td><strong>Differential expression analysis for bulk RNAseq<br><\/strong>Francesca Cordero \u2013 University of Turin, Italy<\/td><td>Computer Training Lab<\/td><\/tr><tr><td>14:30-15:00<\/td><td><strong>Visualising differentially expressed data (Heat maps)<\/strong><br>Raffaele Calogero \u2013 University of Turin, Italy<\/td><td>Computer Training Lab<\/td><\/tr><tr><td>15:00-16:30<\/td><td><strong>Mining differential expression results for bulk RNAseq<br><\/strong>Francesca Cordero \u2013 University of Turin, Italy<\/td><td>Computer Training Lab<\/td><\/tr><tr><td>16:30-17:00<\/td><td>Coffee break<\/td><td>EMBL Canteen<\/td><\/tr><tr><td>17:00 \u2013 18:00<\/td><td><strong>Social programme: Facility tour<\/strong><\/td><td><\/td><\/tr><tr><td>18:00 &#8211; 19:00<\/td><td><strong>Dinner<\/strong><\/td><td>EMBL Canteen<\/td><\/tr><tr><td>19:00<\/td><td><strong>Bus to ISG Hotel<\/strong><\/td><td>ATC Entrance<\/td><\/tr><\/tbody><\/table><\/figure>\n\n<\/div>\n<\/details>\n\n\n\n<details  class=\"vf-details\" id=\"\"  >\n<summary class=\"vf-details--summary\">\nDay 3 &#8211;  Tuesday 9 June 2026<\/summary>\n<div class=\"acf-innerblocks-container\">\n\n<figure class=\"wp-block-table\"><table class=\"has-fixed-layout\"><thead><tr><th><strong>Time (Berlin\/Europe)<\/strong><\/th><th><strong>Speaker<\/strong><\/th><th><strong>Location<\/strong><\/th><\/tr><\/thead><tbody><tr><td>08:40 &#8211; 09:00<\/td><td><strong>Bus from ISG to EMBL<\/strong><\/td><td>ISG Hotel entrance<\/td><\/tr><tr><td>09:00 &#8211; 11:00<\/td><td><strong>Individual exercises on bulk RNAseq<\/strong><br>Raffaele Calogero \u2013 University of Turin, Italy<\/td><td>Computer Training Lab<\/td><\/tr><tr><td>11:00 &#8211; 11:30<\/td><td><strong>Coffee break<\/strong><\/td><td>ATC Foyer<\/td><\/tr><tr><td>11:30 &#8211; 12:30<\/td><td><strong>Individual exercises on bulk RNAseq<\/strong><br>Raffaele Calogero \u2013 University of Turin, Italy<\/td><td>Computer Training Lab<\/td><\/tr><tr><td>12:30 &#8211; 13:30<\/td><td><strong>Lunch<\/strong><\/td><td>EMBL Canteen<\/td><\/tr><tr><td>13:30 &#8211; 14:30<\/td><td><strong>QC single cells RNAseq<\/strong><br>Raffaele Calogero \u2013 University of Turin<\/td><td>Computer Training Lab<\/td><\/tr><tr><td>14:30 &#8211; 15:00<\/td><td><strong>Non linear dimensionality reduction for single cell RNAseq<\/strong><br>Marco Beccuti\u2013 University of Turin, Italy<\/td><td>Computer Training Lab<\/td><\/tr><tr><td>15:00 &#8211; 15:30<\/td><td><strong>Coffee break<\/strong><\/td><td>ATC Foyer<\/td><\/tr><tr><td>15:30 &#8211; 16:30<\/td><td><strong>Sub-population discovery in single cell RNAseq: clustering<\/strong><br>Marco Beccuti \u2013 University of Turin, Italy<\/td><td>Computer Training Lab<\/td><\/tr><tr><td>16:30 &#8211; 18:00<\/td><td><strong>Excercises<\/strong><\/td><td><\/td><\/tr><tr><td>18:00 &#8211; 19:00<\/td><td><strong>Dinner<\/strong><\/td><td>EMBL Canteen<\/td><\/tr><tr><td>19:00<\/td><td><strong>Bus to ISG Hotel<\/strong><\/td><td>ATC Entrance<\/td><\/tr><\/tbody><\/table><\/figure>\n\n<\/div>\n<\/details>\n\n\n\n<details  class=\"vf-details\" id=\"\"  >\n<summary class=\"vf-details--summary\">\nDay 4 &#8211; Wednesday 10 June 2026<\/summary>\n<div class=\"acf-innerblocks-container\">\n\n<figure class=\"wp-block-table\"><table class=\"has-fixed-layout\"><thead><tr><th><strong>Time (Berlin\/Europe)<\/strong><\/th><th><strong>Speaker<\/strong><\/th><th><strong>Location<\/strong><\/th><\/tr><\/thead><tbody><tr><td>08:40 &#8211; 09:00<\/td><td><strong>Bus from ISG to EMBL<\/strong><\/td><td>ISG Hotel entrance<\/td><\/tr><tr><td>09:00 &#8211; 10:00<\/td><td><strong>Annotating cell types after sub-population discovery<\/strong><br>Raffaele Calogero-University of Turin, Italy<\/td><td>Computer Training Lab<\/td><\/tr><tr><td>10:00 \u2013 11:00<\/td><td><strong>scRNA data integration<\/strong><br>Marco Beccuti \u2013 University of Turin, Italy<\/td><td>Computer Training Lab<\/td><\/tr><tr><td>11:00 &#8211; 11:30<\/td><td><strong>Coffee break<\/strong><\/td><td>ATC Foyer<\/td><\/tr><tr><td>11:30 &#8211; 12:30<\/td><td><strong>Introduction to Seurat package<\/strong><br>Raffaele Calogero &#8211; University of Turin, Italy<\/td><td>Computer Training Lab<\/td><\/tr><tr><td>12:30 &#8211; 13:30<\/td><td><strong>Lunch and group photo<\/strong><\/td><td>EMBL Canteen<\/td><\/tr><tr><td>13:30-18:00<\/td><td><strong>Individual exercises on single cell RNAseq (Seurat package)<\/strong><\/td><td>Computer Training Lab<\/td><\/tr><tr><td>18:00 &#8211; 19:00<\/td><td>Dinner<\/td><td>EMBL Canteen<\/td><\/tr><tr><td>19:00<\/td><td><strong>Bus to ISG Hotel<\/strong><\/td><td>IATC Entrance<\/td><\/tr><\/tbody><\/table><\/figure>\n\n<\/div>\n<\/details>\n\n\n\n<details  class=\"vf-details\" id=\"\"  >\n<summary class=\"vf-details--summary\">\nDay 5 &#8211; Thursday 11 June 2026<\/summary>\n<div class=\"acf-innerblocks-container\">\n\n<figure class=\"wp-block-table\"><table class=\"has-fixed-layout\"><thead><tr><th><strong>Time (Berlin\/Europe)<\/strong><\/th><th><strong>Speaker<\/strong><\/th><th><strong>Location<\/strong><\/th><\/tr><\/thead><tbody><tr><td>09:00 \u2013 09:30<\/td><td><strong>Bus from ISG to EMBL<\/strong><\/td><td>ISG Hotel entrance<\/td><\/tr><tr><td>09:30 &#8211; 10:00<\/td><td><strong>An introduction to scATACseq as scMultiomics<\/strong><br>Raffaele Calogero \u2013 University of Turin, Italy<\/td><td>Computer Training Lab<\/td><\/tr><tr><td>10:00 &#8211; 10:30<\/td><td><strong>Creating a scATACseq object (singac package)<\/strong><br>Raffaele Calogero &amp; Luca Alessandri \u2013 University of Turin, Italy<\/td><td>Computer Training Lab<\/td><\/tr><tr><td>10:30 &#8211; 11:00<\/td><td><strong>Computing QC metrics &amp; annotation<\/strong><br>Raffaele Calogero &amp; Luca Alessandri \u2013 University of Turin, Italy<\/td><td>Computer Training Lab<\/td><\/tr><tr><td>11:00 &#8211; 11:30<\/td><td><strong>Coffee break<\/strong><\/td><td>ATC Foyer<\/td><\/tr><tr><td>11:30 &#8211; 12:00<\/td><td><strong>Normalization, dimensionality reduction and clustering<\/strong><br>Raffaele Calogero &amp; Marco Beccuti \u2013 University of Turin, Italy<\/td><td>Computer Training Lab<\/td><\/tr><tr><td>12:00 &#8211; 13:00<\/td><td><strong>Lunch<\/strong><\/td><td>EMBL Canteen<\/td><\/tr><tr><td>13:00 &#8211; 13:30<\/td><td><strong>scATAC-seq data integration<\/strong><br>Raffaele Calogero &amp; Luca Alessandri \u2013 University of Turin, Italy<\/td><td>Computer Training Lab<\/td><\/tr><tr><td>13:30-14:00<\/td><td><strong>Plotting data<\/strong><br>Raffaele Calogero &amp; Luca Alessandri \u2013 University of Turin, Italy<\/td><td><\/td><\/tr><tr><td>14:00 &#8211; 18:00<\/td><td><strong>Individual exercises on single cell ATACseq<\/strong><\/td><td>ATC Foyer<\/td><\/tr><tr><td>18:00 &#8211; 18:30<\/td><td><strong><strong>Social dinner downtown<br><\/strong><\/strong><em>Bus to ISG from EMBL ATC (20 minutes at ISG hotel to drop things)<\/em><\/td><td>EMBL Canteen<\/td><\/tr><tr><td>18:30 &#8211; 19:00<\/td><td><strong>Social dinner<\/strong><br><em>Bus from ISG to Neckarm\u00fcnzplatz to the restaurant<\/em><\/td><td>Restaurant downtown<\/td><\/tr><tr><td>19:00<\/td><td><strong>Bus to ISG Hotel<\/strong><\/td><td>ATC Entrance<\/td><\/tr><\/tbody><\/table><\/figure>\n\n<\/div>\n<\/details>\n\n\n\n<details  class=\"vf-details\" id=\"\"  >\n<summary class=\"vf-details--summary\">\nDay 6 &#8211; Friday 12 June 2026<\/summary>\n<div class=\"acf-innerblocks-container\">\n\n<figure class=\"wp-block-table\"><table class=\"has-fixed-layout\"><thead><tr><th><strong>Time<br>(Berlin\/Europe)<\/strong><\/th><th><strong>Speaker<\/strong><\/th><th><strong>Location<\/strong><\/th><\/tr><\/thead><tbody><tr><td>09:00 &#8211; 09:30<\/td><td><strong>Bus from ISG to EMBL<\/strong><\/td><td>ISG Hotel entrance<\/td><\/tr><tr><td>09:30 &#8211; 10:30<\/td><td><strong>Buinding a Docker<\/strong><br>Luca Alessandri &#8211; University of Turin, Italy<\/td><td>Computer Training Lab<\/td><\/tr><tr><td>10:30 &#8211; 11:00<\/td><td><strong>Coffee break<\/strong><\/td><td>ATC Foyer<\/td><\/tr><tr><td>11:00 &#8211; 12:30<\/td><td><strong>Data mining with Orange<\/strong><br>Marco Beccuti &#8211; University of Turin, Italy<\/td><td>Computer Training Lab<\/td><\/tr><tr><td>12:30 &#8211; 13:30<\/td><td><strong>Lunch<\/strong><\/td><td>EMBL Canteen<\/td><\/tr><tr><td>13:30 &#8211; 16:00<\/td><td><strong>Revision exercises<\/strong><br><\/td><td>Computer Training Lab<\/td><\/tr><tr><td>16:00 &#8211; 16:30<\/td><td><strong>Final remarks<\/strong><br>Vladimir Benes, Raffaele Calogero, Marco Beccuti<br>Luca Alessandri<\/td><td>Computer Training Lab<\/td><\/tr><tr><td>16:30<\/td><td><strong>Bus to Heidelberg train station<\/strong><\/td><td>ATC Entrance<\/td><\/tr><\/tbody><\/table><\/figure>\n\n<\/div>\n<\/details>\n<\/section>\n\n\n\n<section class=\"vf-tabs__section\" id=\"vf-tabs__section-bb16a4f5-160e-4468-9313-19a500d91493\"><h2>Practical information<\/h2>\n<details  class=\"vf-details\" id=\"\"  >\n<summary class=\"vf-details--summary\">\nRegistration fees and motivation letter<\/summary>\n<div class=\"acf-innerblocks-container\">\n\n<p>The course is&nbsp;<strong>limited to 28 participants<\/strong>. For selection purposes, please note that your application will not be considered without a&nbsp;letter of motivation.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Registration<\/h2>\n\n\n\n<p><strong>Registration fees<\/strong>&nbsp;include admission, course materials, meals and coffee breaks. Participants are expected to book and pay their own accommodation and travel expenses.&nbsp;<br><\/p>\n\n\n\n<figure class=\"wp-block-table\"><table><tbody><tr><td><strong>Academia<\/strong><\/td><td>\u20ac740<\/td><\/tr><tr><td><strong>PhD Student<\/strong><\/td><td>\u20ac740<\/td><\/tr><tr><td><strong>Industry<\/strong><\/td><td>\u20ac1250<\/td><\/tr><\/tbody><\/table><\/figure>\n\n\n\n<p><\/p>\n\n\n\n<p><strong>A letter to support your <\/strong><strong>visa <\/strong><strong>application <\/strong>will be issued, on request, once payment of the registration fee is confirmed. We recommend that you book your visa appointment as soon as possible, to avoid any delay with your visa application.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Confirmation and payment<\/h2>\n\n\n\n<p>The registration fee should be paid only after acceptance to the course.&nbsp;The results will be announced approximately 2-3 weeks after the application deadline.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\" id=\"letter\">Motivation letter submission<\/h2>\n\n\n\n<p>After you have logged in and successfully registered, you will receive an email asking you to submit your motivation letter. Click on the link provided and enter your motivation letter in the text box provided. Alternatively you can submit your motivation letter by clicking on the link on the confirmation page directly after registering. <\/p>\n\n\n\n<p><strong>Instructions<\/strong><\/p>\n\n\n\n<ol class=\"wp-block-list\">\n<li>Include your relevant skills, experience and qualifications showing why you would be suitable for the course.<\/li>\n\n\n\n<li>Explain why you would like to attend, including what you can contribute and how you think you will benefit from the course.<\/li>\n<\/ol>\n\n\n\n<p>Please note: <\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>The limit of 2000 characters refers to manually typed text and excludes spaces. If an error occurs try using a different web browser (preferably Google Chrome or Mozilla Firefox). <\/li>\n\n\n\n<li>If you copy-paste the text into the form, hidden formatting might still be included which may cause the text to exceed the 2,000 character limit resulting in an error message. We recommend you clear all formatting before pasting in the text. <\/li>\n\n\n\n<li>If you have special symbols in your text, make sure you are using Unicode characters, otherwise these will not be recognised. <\/li>\n<\/ul>\n\n\n\n<p>For detailed instructions, please watch our <a href=\"https:\/\/youtu.be\/M5OHYbAc4mA\">video on how to submit a course motivation letter<\/a>.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Further details<\/h2>\n\n\n\n<p>For further information about registration and motivation letter submission please refer to the&nbsp;<a href=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/information-for-participants\/frequently-asked-questions\/#FAQ_motivationletter\">FAQ page<\/a>.<\/p>\n\n<\/div>\n<\/details>\n\n\n\n<details  class=\"vf-details\" id=\"\"  >\n<summary class=\"vf-details--summary\">\nFinancial assistance<\/summary>\n<div class=\"acf-innerblocks-container\">\n\n<h2 class=\"wp-block-heading\">Financial assistance<\/h2>\n\n\n\n<p>Limited financial assistance is provided by the EMBL Advanced Training Centre Corporate Partnership Programme and EMBO in the form of<strong> registration fee waivers<\/strong>, <strong>travel grants and childcare grants<\/strong>.&nbsp;<\/p>\n\n\n\n<p>Your place in the meeting is only confirmed by paying the registration fee, which is mandatory even when receiving a fee waiver.<\/p>\n\n\n\n<p><\/p>\n\n\n\n<h3 class=\"wp-block-heading\"><strong>Registration fee waiver<\/strong><\/h3>\n\n\n\n<p>The <strong>fee waiver<\/strong> will cover the registration sum that you have paid to attend the course.<\/p>\n\n\n\n<h3 class=\"wp-block-heading\"><strong>Travel grant<\/strong><\/h3>\n\n\n\n<p>The <strong>travel grant<\/strong> will cover the cost of travel (airfare, train, bus, taxi, accommodation, visa, and\/or registration fees*) and is provided up to specified caps which are normally as follows:<\/p>\n\n\n\n<p>\u2013 up to \u20ac400 for participants travelling to an EMBL Course within Europe.<\/p>\n\n\n\n<p>\u2013 up to \u20ac1000 for participants travelling to an EMBL Course from outside Europe.<\/p>\n\n\n\n<p>\u2013 up to \u20ac500 for any participant travelling to an EMBO Practical Course.<\/p>\n\n\n\n<p>\u2013 up to \u20ac1000 for any participant working in Chile, India, Singapore or Taiwan travelling to an EMBO Practical Course.<\/p>\n\n\n\n<p>*Registration fees are only covered for EMBO Practical Courses<\/p>\n\n\n\n<p>The organisers may reduce the grant cap to accommodate more participants. Recipients will be notified of their travel cap amount when they are informed of the outcome of their application. Original receipts must be provided with your signature for all costs incurred within two months of completion of travel. Scanned copies cannot be accepted.<\/p>\n\n\n\n<h3 class=\"wp-block-heading\"><strong>Childcare grant<\/strong><\/h3>\n\n\n\n<p>There is the possibility to apply for a childcare grant to offset child care costs incurred by participants, speakers, trainers and organisers when attending a course. Eligible costs include (but are not limited to) fees for a babysitter or child-care facility and travel costs for a caregiver. Please note that priority will be given to early-stage researchers. There is a limited amount of funding available for the childcare grants and funds will be distributed amongst eligible applicants.<\/p>\n\n\n\n<p><\/p>\n\n\n\n<h3 class=\"wp-block-heading\"><strong>Boehringer Ingelheim Fonds travel grant<\/strong><\/h3>\n\n\n\n<p>Applies to selected courses only. Availability will be indicated during the motivation letter submission process.<\/p>\n\n\n\n<p>This grant covers costs related to your attendance at the course (registration, travel and accommodation costs). The grant is restricted to PhD students and postdocs who conduct basic biomedical research.<\/p>\n\n\n\n<p>Whether you are eligible to apply for a travel grant, depends on when you received your university entrance qualification (e.g. Abitur, A-Levels, High School Diploma, Final State Examination):<\/p>\n\n\n\n<p>&#8211; for PhD and MD students, as well as graduates, the university entrance qualification must not have been obtained more than 11 years ago at the time of the envisaged course<\/p>\n\n\n\n<p>&#8211; for postdocs, the university entrance qualification must not have been obtained more than 13 years ago at the time of the envisaged course<\/p>\n\n\n\n<h2 class=\"wp-block-heading\"><strong>Application<\/strong><\/h2>\n\n\n\n<p>You may apply for financial assistance when submitting your motivation letter for courses. In your application, you will be asked to answer questions regarding why your lab cannot fund your attendance and how your attendance will make a difference to your career. Application for financial support will not affect the outcome of your registration application.<\/p>\n\n\n\n<p>For the Boehringer Ingelheim Fonds Travel Grant, there is a pre-application question during the motivation letter submission process, and if selected you will be requested to complete a standard form and documentation consisting of your travel expense estimation.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\"><strong>Selection<\/strong><\/h2>\n\n\n\n<p>The scientific organisers will select the recipients of registration fee waivers and travel grants during the motivation letter or abstract selection process. Results will be announced approximately 6 \u2013 8 weeks before the event start date, however for some events this may be delayed. Selection results do not impact your admission to the meeting. Selection for registration fee waivers and travel grants is based on scientific merit, your current work or study location, the reasons for needing financial support, and the impact this event will have on your career.<\/p>\n\n\n\n<p>Childcare grants will be allocated in the same timeframe (6-8 weeks before the event start date). Please note that priority will be given to early-stage researchers.<\/p>\n\n\n\n<p><\/p>\n\n\n\n<h2 class=\"wp-block-heading\"><strong>Reimbursement<\/strong><\/h2>\n\n\n\n<p>Costs will be reimbursed after the meeting only once a reimbursement form and original receipts (from travel costs) have been received.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\"><strong>Further details<\/strong><\/h2>\n\n\n\n<p>See our <a href=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/information-for-participants\/external-funding-sources\/\">list of external funding opportunities<\/a> and for further information about financial assistance please refer to the <a href=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/information-for-participants\/frequently-asked-questions\/#FAQ_financialassistance\">FAQ page<\/a>.<\/p>\n\n<\/div>\n<\/details>\n\n\n\n<details  class=\"vf-details\" id=\"\"  >\n<summary class=\"vf-details--summary\">\nAccommodation and travel<\/summary>\n<div class=\"acf-innerblocks-container\">\n\n<h2 class=\"wp-block-heading\">Travel information<\/h2>\n\n\n\n<p id=\"block-a4c3cf7b-12fb-403c-bb35-e1b09ad2971a\">For travel information,<a href=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/information-for-participants\/travel-information\/\"> please see here<\/a>.<\/p>\n\n\n\n<p id=\"block-513f75f0-58fb-4358-b287-3183b80e26c7\">If you are travelling to the conference within Germany then you are eligible for the Deutsche Bahn \u2018Event Ticket\u2019 (called the \u2018Veranstaltungsticket\u2019 in German). This will result in a lower ticket price if your travel distance to Heidelberg is more than 100 km. You need to provide proof of your event attendance when purchasing the ticket.<\/p>\n\n\n\n<p id=\"block-1d3f44cb-5ff5-4356-9de9-30a2281daa58\">For more information<a href=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/Event-ticket-details.pdf\"> in English see here<\/a> or<a href=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/Details-zum-Event-ticket.pdf\"> in German see here<\/a>.<\/p>\n\n\n\n<p id=\"block-87e66ae6-5724-4a4d-980f-4264d029a70c\">You can <a href=\"https:\/\/www.veranstaltungsticket-bahn.de\/?event=8462&amp;language=en\">book your ticket here<\/a>.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\" id=\"block-cf18f8b2-32ab-4557-946b-dcb1bb4ad36b\">Hotel<\/h2>\n\n\n\n<p id=\"block-f531d356-830b-46d6-915b-4b03e092068b\">Accommodation is not included in the registration fee. Participants are expected to book and pay for their own accommodation. A mix of single and twin rooms have been reserved for 6 nights from Saturday 6 June &#8211; Friday 12 June at the <a href=\"https:\/\/isg-hotel.de\/de\/\">ISG Hotel<\/a>.&nbsp;<\/p>\n\n\n\n<p id=\"block-d099e716-dd03-4f8c-9530-d15653438ea7\">Single rooms are limited and will be available on a first come, first served basis. After the selection process, selected participants should contact the hotel directly to make a booking with a booking code (code of your course DAT26-01) <strong>by the deadline of Friday, 8 May 2026<\/strong>. We recommend that all course participants stay in the dedicated hotel for the course.<\/p>\n\n\n\n<p id=\"block-ced4faff-ec45-41da-83b1-75c0536a8a0e\"><\/p>\n\n\n\n<h2 class=\"wp-block-heading\" id=\"block-67df7bcf-8f69-4293-8349-09ec58746079\">Local transport<\/h2>\n\n\n\n<p id=\"block-4b0de80a-2349-4beb-b832-4ca6d51ae61a\">Shuttle buses will go from the ISG Hotel to EMBL and back, mornings and evenings. A bus schedule and location of the bus stops will be made available prior to the meeting.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\" id=\"block-0183ec43-11ac-4283-bf46-2bc80c2db4d3\">Further details<\/h2>\n\n\n\n<p>Address: EMBL Heidelberg, Meyerhofstra\u00dfe 1, 69117 Heidelberg, Germany<br><br>For more information about accommodation and travel, please refer to the <a href=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/information-for-participants\/frequently-asked-questions\/#FAQ_travel\">FAQ page<\/a><a href=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/information-for-participants\/frequently-asked-questions\/\">.<\/a><\/p>\n\n<\/div>\n<\/details>\n\n\n\n<details  class=\"vf-details\" id=\"\"  >\n<summary class=\"vf-details--summary\">\nOn-site information<\/summary>\n<div class=\"acf-innerblocks-container\">\n\n<h2 class=\"wp-block-heading\">Catering<\/h2>\n\n\n\n<p>All meals and coffee breaks are included in the registration fee. Our catering staff will prepare a wide variety of vegetarian meals, meat and fish dishes, soups, pasta, fresh fruit and vegetables, as well as a variety of desserts.<\/p>\n\n\n\n<p>Please wear your badge at all times when serving yourself.<\/p>\n\n\n\n<p>No food or drinks are allowed in the laboratories.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Electricity and charging station<\/h2>\n\n\n\n<p>In most places the electricity is 220 volts AC (50 cycles). An adaptor and a plug that fits the German socket may be needed for your appliances\/laptop (i.e. American, Japanese, etc.). A USB charging station for electronic devices is available at the registration desk.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\">EMBL Merchandise<\/h2>\n\n\n\n<p>If you are interested in purchasing EMBL merchandise (products presented in the glass display in the registration area), please email the&nbsp;<a href=\"mailto:heck@embl.de\" target=\"_blank\" rel=\"noreferrer noopener\">EMBL shop<\/a>&nbsp;to place an order or get in contact with your Course Organiser.<\/p>\n\n\n\n<p>Kindly note the EMBL shop is only open upon request and all purchases must be made in cash (Euros only).<\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Health and safety notes<\/h2>\n\n\n\n<p>Please read EMBL\u2019s&nbsp;<a href=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/?page_id=15120\">COVID-19 safety policy&nbsp;<\/a>for on-site events.<br>Do not smoke in any EMBL building.<br>Eating and drinking is prohibited in all laboratories.<br>Do not enter any restricted areas or the laboratories unless instructed to do so.<\/p>\n\n\n\n<p>If first aid is required \u2026<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>The first aid room is located next to the ATC Registration Desk (room 10- 205).<\/li>\n\n\n\n<li>Dial the Emergency number 222 from any EMBL internal phone only.<\/li>\n\n\n\n<li>Where is the accident? What happened? How many injured?<\/li>\n\n\n\n<li>Emergency number 06221-387 7821 from mobile phones.<\/li>\n\n\n\n<li>Please report all accidents to the conference officer at the registration desk.<\/li>\n<\/ul>\n\n\n\n<p>In case of fire \u2026<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Press the nearest fire alarm button or the Emergency number 222 from any internal phone.<\/li>\n\n\n\n<li>A loud fire alarm will go off if an evacuation is required. On hearing the alarm leave the building immediately following the escape route and fire wardens and head to one of the meeting points<\/li>\n\n\n\n<li>Do not use the lifts.<\/li>\n<\/ul>\n\n\n\n<p>Beyond first aid\u2026<\/p>\n\n\n\n<p>Please remember to bring your own medication, if needed, to the conference. Note that the next pharmacy is a 4-minute drive from the EMBL, but for many medications you will be required to see a doctor to get a prescription.<\/p>\n\n\n\n<p>Ensure in advance that your medical insurance will cover you during your visit in the event that you do need to see a doctor while in Heidelberg. In any case, the EMBL Course and Conference Office will assist you to get to the pharmacy and a doctor of your choice if necessary.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Internet<\/h2>\n\n\n\n<p>Wi-Fi is available on campus. Log in using the&nbsp;<strong>EMBL-Events<\/strong>&nbsp;network and the event specific password, which will be provided on site. The eduroam network (secure, worldwide roaming access service developed for the international research and education community) is also available.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Lost and found<\/h2>\n\n\n\n<p>\u2018\u2019Lost and Found\u2019\u2019 items are kept at the registration desk until the end of the conference.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Luggage<\/h2>\n\n\n\n<p>There are lockers available on-site to store your luggage, which require a 2 EURO coin to operate. There is another luggage room on level E0, which is free to use but remains unlocked during the conference.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Nursing room<\/h2>\n\n\n\n<p>There is a nursing room available in the ATC Rooftop Lounge on level A29.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Photography<\/h2>\n\n\n\n<p>During the conference, an EMBL Photographer may be taking photos. If you would not like to appear in these, please inform the photographer or a member of the Course and Conference Office.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Printing<\/h2>\n\n\n\n<p>We can help to print your boarding pass\/train ticket. Please send it to&nbsp;<a href=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/events\/dat24-01\/events@embl.de\">events@embl.de<\/a>&nbsp;and collect your print-outs at the registration desk.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Room for prayer, yoga, and meditation<\/h2>\n\n\n\n<p>There is a room for prayer, meditation, and yoga located on level E0 behind the Auditorium. Please be respectful of others using the room.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Sightseeing<\/h2>\n\n\n\n<p>A variety of&nbsp;<a href=\"https:\/\/www.heidelberg-marketing.de\/\" target=\"_blank\" rel=\"noreferrer noopener\">activities in Heidelberg can be found on the website of Heidelberg Marketing.<\/a><\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Travel to and from the venue<\/h2>\n\n\n\n<p>During the event, we provide conference shuttle buses to and from EMBL. In addition, there is the public bus 39A that serves the EMBL campus and taxis can be easily booked at any time. Information on the shuttle buses can be found on the individual event website and more detailed information on travelling to EMBL can be found on our<a href=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/information-for-participants\/travel-information\/\">&nbsp;Travel Information&nbsp;<\/a>page.<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li><a href=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/5-Map-EMBL-to-ISG-footpath.jpg\" target=\"_blank\" rel=\"noreferrer noopener\">Map to walk from ISG Hotel to EMBL<\/a><\/li>\n<\/ul>\n\n\n\n<h2 class=\"wp-block-heading\">Additional information<\/h2>\n\n\n\n<p>Address: EMBL Heidelberg, Meyerhofstra\u00dfe 1, 69117 Heidelberg, Germany<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li><a href=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/2-ATC-Orientation-Map.jpg\" target=\"_blank\" rel=\"noreferrer noopener\">ATC orientation map<\/a><\/li>\n<\/ul>\n\n\n\n<p>Please find additional information including FAQs, terms and conditions, COVID-19 safety policy and travelling to EMBL on our&nbsp;<a href=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/information-for-participants\/\">Information for Participants page.<\/a><\/p>\n\n<\/div>\n<\/details>\n\n\n\n<details  class=\"vf-details\" id=\"\"  >\n<summary class=\"vf-details--summary\">\nTechnical requirements and event software<\/summary>\n<div class=\"acf-innerblocks-container\">\n\n<h2 class=\"wp-block-heading\">Technical requirements<\/h2>\n\n\n\n<p>Below you will find the software and technical requirements for this course.<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Participants need to bring their own laptops, which will be used to remotely access EMBL virtual machines with pre-installed software.<\/li>\n\n\n\n<li>You will need admin rights to install the software required to access the virtual machines. If you do not have admin rights, please contact your technical support team in advance to make sure the software can be installed.<\/li>\n\n\n\n<li>If you have a non-standard&nbsp;HDMI port&nbsp;(other than type A), you need to bring an adaptor.<\/li>\n\n\n\n<li>Keyboard and PC mouse are available for use with a standard USB port. If you have a different port type, such as USB-C, you will need to bring your own.<\/li>\n<\/ul>\n\n\n\n<h2 class=\"wp-block-heading\">Event software<\/h2>\n\n\n\n<p>The EMBL eCampus learning platform will be used to collaborate, communicate and network with all of the course participants. All participants will receive information on how to join shortly before the course. We recommend using Chrome, Safari or Mozilla Firefox browsers for eCampus.&nbsp;<\/p>\n\n<\/div>\n<\/details>\n\n\n\n<details  class=\"vf-details\" id=\"\"  >\n<summary class=\"vf-details--summary\">\nAdditional information<\/summary>\n<div class=\"acf-innerblocks-container\">\n\n<p>Please find additional information including FAQs, terms and conditions, COVID-19 safety policy and travelling to EMBL on our&nbsp;<a href=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/information-for-participants\/\">Information for Participants page.<\/a><\/p>\n\n<\/div>\n<\/details>\n<\/section>\n\n\n\n<section class=\"vf-tabs__section\" id=\"vf-tabs__section-sponsors\"><h2>Sponsors<\/h2>\n<p><\/p>\n\n\n\n<p><strong>Sponsorship opportunities<\/strong><\/p>\n\n\n\n<p>We offer a variety of event sponsoring possibilities, with the flexibility to select a set sponsorship package or combine individual sponsorship options to suit your event budget.&nbsp;Discounts are available for companies sponsoring multiple events at EMBL Heidelberg.&nbsp;<a href=\"https:\/\/www.embl.org\/events\/\">View other events<\/a>, or contact&nbsp;<a href=\"mailto:sponsorship@embl.de\">sponsorship@embl.de<\/a>&nbsp;for further information.<\/p>\n\n\n\n<p>If you are interested in becoming a media partner of this event, please visit our&nbsp;<a href=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/sponsor-an-event\/#vf-tabs__section-08208670-4ad4-45ca-a4ff-ac6edb6ffd0b\" target=\"_blank\" rel=\"noreferrer noopener\">media partnerships webpage<\/a>.<\/p>\n\n\n\n<div class=\"wp-block-buttons is-layout-flex wp-block-buttons-is-layout-flex\"><p><a href=\"mailto:sponsorship@embl-em.de?subject=%20Request%20a%20Sponsorship%20Brochure&#038;body=Please%20kindly%20send%20me%20the%20sponsorship%20brochure%20for%20the%20course:%20Whole%20transcriptome%20data%20analysis,%201%20-%206%20June%202025.\" class=\"vf-button vf-button--primary vf-button--pill\">Request a sponsorship brochure<\/a><\/p><\/div>\n\n\n\n<div class=\"vf-box vf-box--normal vf-box-theme--quaternary | vf-u-margin__bottom--400\">\n      <h3 class=\"vf-box__heading\">\n                Warning                  <\/h3> \n        <p class=\"vf-box__text\">EMBL advises sponsors to beware of fraudulent schemes falsely offering sponsorship opportunities. All legitimate communication about sponsorship for EMBL conferences, symposia, and courses comes directly from EMBL via official EMBL email accounts. EMBL does not use third parties for sponsorship acquisition.<\/p>\n<p class=\"vf-box__text\">\u2013 EMBL does not sell attendee lists.<br \/>\n\u2013 EMBL will never ask for credit card details or direct payments.<br \/>\n\u2013 All payments are processed by invoice only.<\/p>\n<p class=\"vf-box__text\">If you receive a suspicious message claiming to be from or on behalf of EMBL, please report it to\u00a0<a href=\"mailto:sponsorship@embl.org\">sponsorship@embl.org<\/a>.<\/p>\n<\/div><\/section>\n\n\n\n<section class=\"vf-tabs__section\" id=\"vf-tabs__section-media-kit\"><h2>Media kit<\/h2>\n<p>Want to let others know you\u2019re attending this event? Take a look at our shareable media and feel free to use them in your social media channels or presentations.<\/p>\n\n\n\n<div class=\"vf-grid | vf-grid__col-3\"><div><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<figure class=\"vf-figure wp-block-image  | vf-figure--align vf-figure--align-centered  size-large is-resized\"><a href=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/DAT26-01-IG-story-media-kit.jpg\"><img loading=\"lazy\" decoding=\"async\" width=\"576\" height=\"1024\" class=\"vf-figure__image\" src=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/DAT26-01-IG-story-media-kit-576x1024.jpg\" alt=\"\" class=\"wp-image-240077\" style=\"width:169px;height:300px\" srcset=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/DAT26-01-IG-story-media-kit-576x1024.jpg 576w, https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/DAT26-01-IG-story-media-kit-169x300.jpg 169w, https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/DAT26-01-IG-story-media-kit-768x1365.jpg 768w, https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/DAT26-01-IG-story-media-kit-864x1536.jpg 864w, https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/DAT26-01-IG-story-media-kit.jpg 1080w\" sizes=\"auto, (max-width: 576px) 100vw, 576px\" \/><\/a><figcaption class=\"vf-figure__caption\">Social 1080&#215;1920<\/figcaption><\/figure>\n\n<\/div>\n<\/div>\n\n\n<div><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<figure class=\"vf-figure wp-block-image size-medium is-style-default\"><a href=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/DAT26-01-IG-media-kit-1.jpg\"><img loading=\"lazy\" decoding=\"async\" width=\"240\" height=\"300\" class=\"vf-figure__image\" src=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/DAT26-01-IG-media-kit-1-240x300.jpg\" alt=\"\" class=\"wp-image-240075\" srcset=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/DAT26-01-IG-media-kit-1-240x300.jpg 240w, https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/DAT26-01-IG-media-kit-1-819x1024.jpg 819w, https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/DAT26-01-IG-media-kit-1-768x960.jpg 768w, https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/DAT26-01-IG-media-kit-1.jpg 1080w\" sizes=\"auto, (max-width: 240px) 100vw, 240px\" \/><\/a><figcaption class=\"vf-figure__caption\">Social 1080&#215;1350<\/figcaption><\/figure>\n\n<\/div>\n<\/div>\n\n\n<div><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<figure class=\"vf-figure wp-block-image size-large\"><a href=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/DAT26-01-FB-1.jpg\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"576\" class=\"vf-figure__image\" src=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/DAT26-01-FB-1-1024x576.jpg\" alt=\"\" class=\"wp-image-240073\" srcset=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/DAT26-01-FB-1-1024x576.jpg 1024w, https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/DAT26-01-FB-1-300x169.jpg 300w, https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/DAT26-01-FB-1-768x432.jpg 768w, https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/DAT26-01-FB-1-1536x864.jpg 1536w, https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/DAT26-01-FB-1.jpg 1600w\" sizes=\"auto, (max-width: 1024px) 100vw, 1024px\" \/><\/a><figcaption class=\"vf-figure__caption\">Social 1600&#215;900<\/figcaption><\/figure>\n\n<\/div>\n<\/div>\n<\/div>\n\n\n\n<div class=\"vf-grid | vf-grid__col-3\"><div><!--[vf\/content]-->\n<div class=\"vf-content\">\n\n<figure class=\"vf-figure wp-block-image size-large\"><a href=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/DAT26-01-title-slide.jpg\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"576\" class=\"vf-figure__image\" src=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/DAT26-01-title-slide-1024x576.jpg\" alt=\"\" class=\"wp-image-240705\" srcset=\"https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/DAT26-01-title-slide-1024x576.jpg 1024w, https:\/\/www.embl.org\/about\/info\/course-and-conference-office\/wp-content\/uploads\/DAT26-01-title-slide-300x169.jpg 300w, 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class=\"vf-content\">\n\n<\/div>\n<\/div>\n<\/div>\n<\/section>\n<\/div><\/div>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"","protected":false},"parent":0,"menu_order":0,"template":"","embl_taxonomy":[],"class_list":["post-221341","vf_event","type-vf_event","status-publish","hentry"],"acf":[],"embl_taxonomy_terms":[],"vf_event_start_date":{"value":"20260607","formatted":"7 June 2026"},"vf_event_end_date":{"value":"20260612","formatted":"12 June 2026"},"vf_event_submission_opening":{"value":"","formatted":""},"vf_event_submission_closing":{"value":"","formatted":""},"vf_event_registration_opening":{"value":"","formatted":""},"vf_event_registration_closing":{"value":"","formatted":""},"vf_event_summary":{"value":"This course will teach the biological researchers how to analyse biological data sets using open-source software. 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