Time Series Color Coder

Time Series Color Coder

Author: Kota Miura
Centre for Molecular and Cellualr Imaging (CMCI), EMBL Heidelberg
miura at embl dot de Tel: +49 6221 387 404

History: 080212    created ver1 K_TimeRGBcolorcode.ijm
080213    stack slice range option added.
        time color code scale option added.

        future probable addiition: none-linear assigning of gray intensity to color intensity
        --> but this is same as doing contrast enhancement before processing.

Source: Released under the GNU General Public License.

Installation: Download K_TimeRGBcolorcode.ijm to a place where you can access easily. Install the macro by [Plugins->Macros->Install...].

Requires: ImageJ ver 1.34j or higher (ImageJ, upgrade page).

Description: Temporal changes in position of object will be color coded.

For example, sequece such as

will be converted to color coded stack

Max intensity projection of this sequence yields

Coding table will also be created also (check option).

Work Flow

1. Open a stack (8 bit or 16 bit)
2. Run the macro
3. In the dialog choose one of the LUT for time coding.
    select frame range (default is full).
    check if you want to have color scale bar.

Author:	Kota Miura Centre for Molecular and Cellualr Imaging (CMCI), EMBL Heidelberg miura at embl dot de Tel: +49 6221 387 404
History:	080212 created ver1 K_TimeRGBcolorcode.ijm 080213 stack slice range option added. time color code scale option added. future probable addiition: none-linear assigning of gray intensity to color intensity --> but this is same as doing contrast enhancement before processing.
Source:	Released under the GNU General Public License.
Installation:	Download K_TimeRGBcolorcode.ijm to a place where you can access easily. Install the macro by [Plugins->Macros->Install...].
Requires:	ImageJ ver 1.34j or higher (ImageJ, upgrade page).
Description:	Temporal changes in position of object will be color coded. For example, sequece such as will be converted to color coded stack Max intensity projection of this sequence yields Coding table will also be created also (check option). Work Flow 1. Open a stack (8 bit or 16 bit) 2. Run the macro 3. In the dialog choose one of the LUT for time coding. select frame range (default is full). check if you want to have color scale bar.